comparison proteinpilot_group_extractor.xml @ 9:8935cf27e8fd

Fix quantitation Denominator settings.

8:0aa9d080713e

<tool id="proteinpilot_group_extractor" name="ProteinPilot - GroupFileExtractor" version="5.0.0">
  <description>convert group file to tabular reports, mzIndentML, and MGF</description>
  <command>
<![CDATA[
    #if $quant.use
    #set $denom = $quant.dtype
    #else
    #set $denom = ""
    #end if
    #set $ptypes = str($ptype).split(',')
    #set $cmd = []

      <option value="XML">XML</option>
      <option value="METADATAXML">METADATAXML</option>
      <option value="METADATACSV">METADATACSV</option>
    </param>
    <conditional name="quant">
      <param name="use" type="boolean" label="Include quantation results" truevalue="true" falsevalue="false" />
      <when value="true">
        <param name="dtype" type="select" label="Denominator">
          <option value="IT113">113</option>
          <option value="IT114" selected="true">114</option>
          <option value="IT115">115</option>
          <option value="IT116">116</option>
          <option value="IT117">117</option>
          <option value="IT118">118</option>
          <option value="IT119">119</option>
          <option value="IT121">121</option>
          <option value="Light">Light</option>
          <option value="Heavy">Heavy</option>
          <option value="Medium">Medium</option>
        </param>
      </when>

9:8935cf27e8fd

<tool id="proteinpilot_group_extractor" name="ProteinPilot - GroupFileExtractor" version="5.0.0">
  <description>convert group file to tabular reports, mzIndentML, and MGF</description>
  <command>
<![CDATA[
    #if $quant.use
    #set $denom = str($quant.dtype)
    #else
    #set $denom = ""
    #end if
    #set $ptypes = str($ptype).split(',')
    #set $cmd = []

      <option value="XML">XML</option>
      <option value="METADATAXML">METADATAXML</option>
      <option value="METADATACSV">METADATACSV</option>
    </param>
    <conditional name="quant">
      <param name="use" type="boolean" label="Include quantitation results" truevalue="true" falsevalue="false" />
      <when value="true">
        <param name="dtype" type="select" label="Denominator">
          <option value="IT113">IT113</option>
          <option value="IT114" selected="true">IT114</option>
          <option value="IT115">IT115</option>
          <option value="IT116">IT116</option>
          <option value="IT117">IT117</option>
          <option value="IT118">IT118</option>
          <option value="IT119">IT119</option>
          <option value="IT121">IT121</option>
          <option value="Light">Light</option>
          <option value="Heavy">Heavy</option>
          <option value="Medium">Medium</option>
        </param>
      </when>