diff convert_windows_newlines.xml @ 8:0aa9d080713e

Update for ProteinPilot version 5.0

--- a/convert_windows_newlines.xml	Mon Oct 20 15:54:33 2014 -0500
+++ b/convert_windows_newlines.xml	Thu Nov 05 13:15:48 2015 -0600
@@ -1,15 +1,17 @@
 <tool id="convert_windows_newlines" version="0.1" name="ProteinPilot - Convert Windows Line Breaks">
-  <description></description>
-  <command>
-     tr -d '\r' &lt; $input1  &gt; $output
-  </command>
-  <inputs>
-    <param format="txt" name="input1" type="data" label="Tabular Input File" help=""/>
-  </inputs>
-  <outputs>
-    <data name="output" format="input" metadata_source="input1"/>
-  </outputs>
-  <help>
-    Standardize the output of Windows tools like "Convert ProteinPilot Group to Tabular" for use in Galaxy.
-  </help>
+    <description></description>
+    <command>
+<![CDATA[
+     tr -d '\r' < $input1 > $output
+]]>
+    </command>
+    <inputs>
+        <param format="txt" name="input1" type="data" label="Tabular Input File" help=""/>
+    </inputs>
+    <outputs>
+        <data name="output" format_source="input" metadata_source="input1"/>
+    </outputs>
+    <help>
+        Standardize the output of Windows tools like "Convert ProteinPilot Group to Tabular" for use in Galaxy.
+    </help>
 </tool>