Mercurial > repos > galaxyp > proteinpilot
view proteinpilot_tabular.xml @ 8:0aa9d080713e
Update for ProteinPilot version 5.0
author | Jim Johnson <jj@umn.edu> |
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date | Thu, 05 Nov 2015 13:15:48 -0600 |
parents | ffbfff887a03 |
children |
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<tool id="proteinpilot_tabular" name="ProteinPilot - Convert Group to Tabular" version="5.0.0"> <description></description> <!-- TOOD: Implement wrapper allowing Windows newlines to be replaced. --> <command> #if $quant.use #set $denom = $quant.dtype #else #set $denom = "" #end if GroupFileExtractor.exe ${ptype} $input $output $denom </command> <inputs> <param format="group" name="input" type="data" label="ProteinPilot Group Data" help=""/> <param name="ptype" type="select" label="Summary Type"> <option value="PROTEIN">Protein</option> <option value="PEPTIDE">Peptide</option> </param> <conditional name="quant"> <param name="use" type="boolean" label="Include quantation results" truevalue="true" falsevalue="false" /> <when value="true"> <param name="dtype" type="select" label="Denominator"> <option value="IT113">113</option> <option value="IT114" selected="true">114</option> <option value="IT115">115</option> <option value="IT116">116</option> <option value="IT117">117</option> <option value="IT118">118</option> <option value="IT119">119</option> <option value="IT121">121</option> <option value="Light">Light</option> <option value="Heavy">Heavy</option> <option value="Medium">Medium</option> </param> </when> <when value="false"/> </conditional> </inputs> <outputs> <data format="tabular" name="output" label="${ptype} report for ${on_string}"/> </outputs> <help> </help> </tool>