changeset 0:3e7ebf62c90f draft default tip

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/proteogenomics_splice_junc_search_db commit 6dcfe37e286523588aa2738599af8d3273290f28-dirty
author galaxyp
date Tue, 10 May 2016 18:12:00 -0400
parents
children
files Proteomics_Splice_DB_from_Paired_End_RNAseq.ga Proteomics_Splice_DB_from_Paired_End_RNAseq_cached_ref.ga Proteomics_Splice_DB_from_Single_End_RNAseq.ga Proteomics_Splice_DB_from_Single_End_RNAseq_cached_ref.ga repository_dependencies.xml
diffstat 5 files changed, 1590 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/Proteomics_Splice_DB_from_Paired_End_RNAseq.ga	Tue May 10 18:12:00 2016 -0400
@@ -0,0 +1,431 @@
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+}
\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/Proteomics_Splice_DB_from_Paired_End_RNAseq_cached_ref.ga	Tue May 10 18:12:00 2016 -0400
@@ -0,0 +1,401 @@
+{
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\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/Proteomics_Splice_DB_from_Single_End_RNAseq.ga	Tue May 10 18:12:00 2016 -0400
@@ -0,0 +1,393 @@
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\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/Proteomics_Splice_DB_from_Single_End_RNAseq_cached_ref.ga	Tue May 10 18:12:00 2016 -0400
@@ -0,0 +1,359 @@
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+            "tool_errors": null, 
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/translate_bed_sequences/translate_bed_sequences/0.1.0", 
+            "tool_state": "{\"trim\": \"{\\\"trimseqs\\\": \\\"yes\\\", \\\"__current_case__\\\": 1}\", \"min_length\": \"\\\"\\\"\", \"fa_sep\": \"\\\"\\\"\", \"fa_db\": \"\\\"generic\\\"\", \"reference\": \"\\\"\\\"\", \"__page__\": 0, \"refsource\": \"\\\"Ensembl\\\"\", \"__rerun_remap_job_id__\": null, \"filter\": \"{\\\"filterseqs\\\": \\\"yes\\\", \\\"trailing_bp\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"leading_bp\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 0}\", \"score_name\": \"\\\"depth\\\"\", \"id_prefix\": \"\\\"\\\"\", \"input\": \"null\", \"seqtype\": \"\\\"pep:splice\\\"\"}", 
+            "tool_version": "0.1.0", 
+            "type": "tool", 
+            "uuid": "f6a04b0d-c01d-4b80-b66b-0a9e540b7cde", 
+            "workflow_outputs": [
+                {
+                    "label": null, 
+                    "output_name": "translated_bed", 
+                    "uuid": "f3c4f84f-3ce8-49cc-b932-f0122d1e6f2f"
+                }, 
+                {
+                    "label": null, 
+                    "output_name": "output", 
+                    "uuid": "b771a5d3-fc36-4006-a967-3de09d08f3fb"
+                }
+            ]
+        }
+    }, 
+    "uuid": "4f5210d3-92c5-43ff-834b-e9b6dc85c0c0"
+}
\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/repository_dependencies.xml	Tue May 10 18:12:00 2016 -0400
@@ -0,0 +1,6 @@
+<?xml version="1.0"?>
+<repositories description="This workflow requires a number of different repositories.">
+    <repository changeset_revision="2ad64c5bb5f4" name="tophat" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="d723eb657f1d" name="translate_bed_sequences" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="915e5c5e02e6" name="filter_bed_on_splice_junctions" owner="jjohnson" toolshed="https://toolshed.g2.bx.psu.edu" />
+</repositories>