diff test-data/result_2.json @ 0:cbdfdca98db3 draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_labeledproteinquantification commit eda2d62c81b38ed3975482d0198e3dd75ff1d74f"
author galaxyp
date Thu, 16 Sep 2021 21:11:34 +0000
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/result_2.json	Thu Sep 16 21:11:34 2021 +0000
@@ -0,0 +1,715 @@
+
+            
+            {
+                "Correlation_Light_Heavy_Threshold": {
+                    "Case": "Some",
+                    "Fields": [
+                        1.0
+                    ]
+                },
+                "ModificationFilter": {
+                    "Case": "No",
+                },
+                "AggregateGlobalModificationsParams": {
+                    "LabeledTransform": {
+                        "Case": "Some",
+                        "Fields": [
+                            {
+                                "Light": {
+                                    "Case": "Some",
+                                    "Fields": [
+                                        {
+                                            "Case": "Log2",
+                                        }
+                                    ]
+                                },
+                                "Heavy": {
+                                    "Case": "Some",
+                                    "Fields": [
+                                        {
+                                            "Case": "Log2",
+                                        }
+                                    ]
+                                },
+                                "Ratio": {
+                                    "Case": "Some",
+                                    "Fields": [
+                                        {
+                                            "Case": "Log2",
+                                        }
+                                    ]
+                                }
+                            }
+                        ]
+                    },
+                    "LabeledSingleFilters": {
+                        "Case": "Some",
+                        "Fields": [
+                            {
+                                "Light": {
+                                    "Case": "Some",
+                                    "Fields": [
+                                        [
+                                            {
+                                                "Case": "IsBiggerThan",
+                                                "Fields": [
+                                                    1.0 
+                                                ]
+                                            },
+                                            {
+                                                "Case": "IsSmallerThan",
+                                                "Fields": [
+                                                    2.0 
+                                                ]
+                                            }
+                                        ]
+                                    ]
+                                },
+                                "Heavy": {
+                                    "Case": "Some",
+                                    "Fields": [
+                                        [
+                                            {
+                                                "Case": "IsBiggerThan",
+                                                "Fields": [
+                                                    1.0 
+                                                ]
+                                            },
+                                            {
+                                                "Case": "IsSmallerThan",
+                                                "Fields": [
+                                                    2.0 
+                                                ]
+                                            }
+                                        ]
+                                    ]
+                                },
+                                "Ratio": {
+                                    "Case": "Some",
+                                    "Fields": [
+                                        [
+                                            {
+                                                "Case": "IsBiggerThan",
+                                                "Fields": [
+                                                1.0 
+                                                ]
+                                            },
+                                            {
+                                                "Case": "IsSmallerThan",
+                                                "Fields": [
+                                                2.0 
+                                                ]
+                                            }
+                                        ]
+                                    ]
+                                }
+                            }
+                        ]
+                    },
+                    "LabeledGroupFilters": {
+                        "Case": "Some",
+                        "Fields": [
+                            {
+
+                            
+                                "Light": {
+                                    "Case": "Some",
+                                    "Fields": [
+                                        [
+                                            {
+                                                "Case": "Tukey",
+                                                "Fields": [
+                                                1.0
+                                                ]
+                                            },
+                                            {
+                                                "Case": "Stdev",
+                                                "Fields": [
+                                                2.0
+                                                ]
+                                            }
+                                        ]
+                                    ]
+                                },
+                                "Heavy": {
+                                    "Case": "Some",
+                                    "Fields": [
+                                        [
+                                            {
+                                                "Case": "Tukey",
+                                                "Fields": [
+                                                1.0
+                                                ]
+                                            },
+                                            {
+                                                "Case": "Stdev",
+                                                "Fields": [
+                                                2.0
+                                                ]
+                                            }
+                                        ]
+                                    ]
+                                },
+                                "Ratio": {
+                                    "Case": "Some",
+                                    "Fields": [
+                                        [
+                                            {
+                                                "Case": "Tukey",
+                                                "Fields": [
+                                                1.0
+                                                ]
+                                            },
+                                            {
+                                                "Case": "Stdev",
+                                                "Fields": [
+                                                2.0
+                                                ]
+                                            }
+                                        ]
+                                    ]
+                                }
+                                }
+                            ]
+                    },
+                    "LabeledAggregation": {
+                        "Light": {
+                            "Case": "Median"
+                        },
+                        "Heavy": {
+                            "Case": "Sum"
+                        },
+                        "Ratio": {
+                            "Case": "Sum"
+                        }
+                    }                    
+                },
+                "AggregatePeptideChargeStatesParams": {
+                    "Case": "Some",
+                    "Fields": [
+                        {
+                            "LabeledTransform": {
+                                "Case": "Some",
+                                "Fields": [
+                                    {
+                                        "Light": {
+                                            "Case": "Some",
+                                            "Fields": [
+                                                {
+                                                    "Case": "Log2",
+                                                }
+                                            ]
+                                        },
+                                        "Heavy": {
+                                            "Case": "Some",
+                                            "Fields": [
+                                                {
+                                                    "Case": "Log2",
+                                                }
+                                            ]
+                                        },
+                                        "Ratio": {
+                                            "Case": "Some",
+                                            "Fields": [
+                                                {
+                                                    "Case": "Log2",
+                                                }
+                                            ]
+                                        }
+                                    }
+                                ]
+                            },
+                            "LabeledSingleFilters": {
+                                "Case": "Some",
+                                "Fields": [
+                                    {
+                                        "Light": {
+                                            "Case": "Some",
+                                            "Fields": [
+                                                [
+                                                    {
+                                                        "Case": "IsBiggerThan",
+                                                        "Fields": [
+                                                            1.0 
+                                                        ]
+                                                    },
+                                                    {
+                                                        "Case": "IsSmallerThan",
+                                                        "Fields": [
+                                                            2.0 
+                                                        ]
+                                                    }
+                                                ]
+                                            ]
+                                        },
+                                        "Heavy": {
+                                            "Case": "Some",
+                                            "Fields": [
+                                                [
+                                                    {
+                                                        "Case": "IsBiggerThan",
+                                                        "Fields": [
+                                                            1.0 
+                                                        ]
+                                                    },
+                                                    {
+                                                        "Case": "IsSmallerThan",
+                                                        "Fields": [
+                                                            2.0 
+                                                        ]
+                                                    }
+                                                ]
+                                            ]
+                                        },
+                                        "Ratio": {
+                                            "Case": "Some",
+                                            "Fields": [
+                                                [
+                                                    {
+                                                        "Case": "IsBiggerThan",
+                                                        "Fields": [
+                                                        1.0 
+                                                        ]
+                                                    },
+                                                    {
+                                                        "Case": "IsSmallerThan",
+                                                        "Fields": [
+                                                        2.0 
+                                                        ]
+                                                    }
+                                                ]
+                                            ]
+                                        }
+                                    }
+                                ]
+                            },
+                            "LabeledGroupFilters": {
+                                "Case": "Some",
+                                "Fields": [
+                                    {
+                                        "Light": {
+                                            "Case": "Some",
+                                            "Fields": [
+                                                [
+                                                    {
+                                                        "Case": "Tukey",
+                                                        "Fields": [
+                                                        1.0
+                                                        ]
+                                                    },
+                                                    {
+                                                        "Case": "Stdev",
+                                                        "Fields": [
+                                                        2.0
+                                                        ]
+                                                    }
+                                                ]
+                                            ]
+                                        },
+                                        "Heavy": {
+                                            "Case": "Some",
+                                            "Fields": [
+                                                [
+                                                    {
+                                                        "Case": "Tukey",
+                                                        "Fields": [
+                                                        1.0
+                                                        ]
+                                                    },
+                                                    {
+                                                        "Case": "Stdev",
+                                                        "Fields": [
+                                                        2.0
+                                                        ]
+                                                    }
+                                                ]
+                                            ]
+                                        },
+                                        "Ratio": {
+                                            "Case": "Some",
+                                            "Fields": [
+                                                [
+                                                    {
+                                                        "Case": "Tukey",
+                                                        "Fields": [
+                                                        1.0
+                                                        ]
+                                                    },
+                                                    {
+                                                        "Case": "Stdev",
+                                                        "Fields": [
+                                                        2.0
+                                                        ]
+                                                    }
+                                                ]
+                                            ]
+                                        }
+                                    }
+                                ]
+                            },
+                            "LabeledAggregation": {
+                                "Light": {
+                                    "Case": "Median"
+                                },
+                                "Heavy": {
+                                    "Case": "Sum"
+                                },
+                                "Ratio": {
+                                    "Case": "Sum"
+                                }
+                            }
+                        }
+                    ]                    
+                },
+                "AggregateModifiedPeptidesParams": {
+                    "Case": "Some",
+                    "Fields": [
+                        {
+                            "LabeledTransform": {
+                                "Case": "Some",
+                                "Fields": [
+                                    {
+                                        "Light": {
+                                            "Case": "Some",
+                                            "Fields": [
+                                                {
+                                                    "Case": "Log2",
+                                                }
+                                            ]
+                                        },
+                                        "Heavy": {
+                                            "Case": "Some",
+                                            "Fields": [
+                                                {
+                                                    "Case": "Log2",
+                                                }
+                                            ]
+                                        },
+                                        "Ratio": {
+                                            "Case": "Some",
+                                            "Fields": [
+                                                {
+                                                    "Case": "Log2",
+                                                }
+                                            ]
+                                        }
+                                    }
+                                ]
+                            },
+                            "LabeledSingleFilters": {
+                                "Case": "Some",
+                                "Fields": [
+                                    {
+                                        "Light": {
+                                            "Case": "Some",
+                                            "Fields": [
+                                                [
+                                                    {
+                                                        "Case": "IsBiggerThan",
+                                                        "Fields": [
+                                                            1.0 
+                                                        ]
+                                                    },
+                                                    {
+                                                        "Case": "IsSmallerThan",
+                                                        "Fields": [
+                                                            2.0 
+                                                        ]
+                                                    }
+                                                ]
+                                            ]
+                                        },
+                                        "Heavy": {
+                                            "Case": "Some",
+                                            "Fields": [
+                                                [
+                                                    {
+                                                        "Case": "IsBiggerThan",
+                                                        "Fields": [
+                                                            1.0 
+                                                        ]
+                                                    },
+                                                    {
+                                                        "Case": "IsSmallerThan",
+                                                        "Fields": [
+                                                            2.0 
+                                                        ]
+                                                    }
+                                                ]
+                                            ]
+                                        },
+                                        "Ratio": {
+                                            "Case": "Some",
+                                            "Fields": [
+                                                [
+                                                    {
+                                                        "Case": "IsBiggerThan",
+                                                        "Fields": [
+                                                        1.0 
+                                                        ]
+                                                    },
+                                                    {
+                                                        "Case": "IsSmallerThan",
+                                                        "Fields": [
+                                                        2.0 
+                                                        ]
+                                                    }
+                                                ]
+                                            ]
+                                        }
+                                    }
+                                ]
+                            },
+                            "LabeledGroupFilters": {
+                                "Case": "Some",
+                                "Fields": [
+                                    {
+                                        "Light": {
+                                            "Case": "Some",
+                                            "Fields": [
+                                                [
+                                                    {
+                                                        "Case": "Tukey",
+                                                        "Fields": [
+                                                        1.0
+                                                        ]
+                                                    },
+                                                    {
+                                                        "Case": "Stdev",
+                                                        "Fields": [
+                                                        2.0
+                                                        ]
+                                                    }
+                                                ]
+                                            ]
+                                        },
+                                        "Heavy": {
+                                            "Case": "Some",
+                                            "Fields": [
+                                                [
+                                                    {
+                                                        "Case": "Tukey",
+                                                        "Fields": [
+                                                        1.0
+                                                        ]
+                                                    },
+                                                    {
+                                                        "Case": "Stdev",
+                                                        "Fields": [
+                                                        2.0
+                                                        ]
+                                                    }
+                                                ]
+                                            ]
+                                        },
+                                        "Ratio": {
+                                            "Case": "Some",
+                                            "Fields": [
+                                                [
+                                                    {
+                                                        "Case": "Tukey",
+                                                        "Fields": [
+                                                        1.0
+                                                        ]
+                                                    },
+                                                    {
+                                                        "Case": "Stdev",
+                                                        "Fields": [
+                                                        2.0
+                                                        ]
+                                                    }
+                                                ]
+                                            ]
+                                        }
+                                    }
+                                ]
+                            },
+                            "LabeledAggregation": {
+                                "Light": {
+                                    "Case": "Median"
+                                },
+                                "Heavy": {
+                                    "Case": "Sum"
+                                },
+                                "Ratio": {
+                                    "Case": "Sum"
+                                }
+                            }
+                        }
+                    ]
+                },
+                "AggregateToProteinGroupsParams": {
+                    "LabeledTransform": {
+                        "Case": "Some",
+                        "Fields": [
+                            {
+                                "Light": {
+                                    "Case": "Some",
+                                    "Fields": [
+                                        {
+                                            "Case": "Log2",
+                                        }
+                                    ]
+                                },
+                                "Heavy": {
+                                    "Case": "Some",
+                                    "Fields": [
+                                        {
+                                            "Case": "Log2",
+                                        }
+                                    ]
+                                },
+                                "Ratio": {
+                                    "Case": "Some",
+                                    "Fields": [
+                                        {
+                                            "Case": "Log2",
+                                        }
+                                    ]
+                                }
+                            }
+                        ]
+                    },
+                    "LabeledSingleFilters": {
+                        "Case": "Some",
+                        "Fields": [
+                            {
+                                "Light": {
+                                    "Case": "Some",
+                                    "Fields": [
+                                        [
+                                            {
+                                                "Case": "IsBiggerThan",
+                                                "Fields": [
+                                                    1.0 
+                                                ]
+                                            },
+                                            {
+                                                "Case": "IsSmallerThan",
+                                                "Fields": [
+                                                    2.0 
+                                                ]
+                                            }
+                                        ]
+                                    ]
+                                },
+                                "Heavy": {
+                                    "Case": "Some",
+                                    "Fields": [
+                                        [
+                                            {
+                                                "Case": "IsBiggerThan",
+                                                "Fields": [
+                                                    1.0 
+                                                ]
+                                            },
+                                            {
+                                                "Case": "IsSmallerThan",
+                                                "Fields": [
+                                                    2.0 
+                                                ]
+                                            }
+                                        ]
+                                    ]
+                                },
+                                "Ratio": {
+                                    "Case": "Some",
+                                    "Fields": [
+                                        [
+                                            {
+                                                "Case": "IsBiggerThan",
+                                                "Fields": [
+                                                1.0 
+                                                ]
+                                            },
+                                            {
+                                                "Case": "IsSmallerThan",
+                                                "Fields": [
+                                                2.0 
+                                                ]
+                                            }
+                                        ]
+                                    ]
+                                }
+                            }
+                        ]
+                    },
+                    "LabeledGroupFilters": {
+                        "Case": "Some",
+                        "Fields": [
+                            {
+                                "Light": {
+                                    "Case": "Some",
+                                    "Fields": [
+                                        [
+                                            {
+                                                "Case": "Tukey",
+                                                "Fields": [
+                                                1.0
+                                                ]
+                                            },
+                                            {
+                                                "Case": "Stdev",
+                                                "Fields": [
+                                                2.0
+                                                ]
+                                            }
+                                        ]
+                                    ]
+                                },
+                                "Heavy": {
+                                    "Case": "Some",
+                                    "Fields": [
+                                        [
+                                            {
+                                                "Case": "Tukey",
+                                                "Fields": [
+                                                1.0
+                                                ]
+                                            },
+                                            {
+                                                "Case": "Stdev",
+                                                "Fields": [
+                                                2.0
+                                                ]
+                                            }
+                                        ]
+                                    ]
+                                },
+                                "Ratio": {
+                                    "Case": "Some",
+                                    "Fields": [
+                                        [
+                                            {
+                                                "Case": "Tukey",
+                                                "Fields": [
+                                                1.0
+                                                ]
+                                            },
+                                            {
+                                                "Case": "Stdev",
+                                                "Fields": [
+                                                2.0
+                                                ]
+                                            }
+                                        ]
+                                    ]
+                                }
+                            }
+                        ]
+                    },
+                    "LabeledAggregation": {
+                        "Light": {
+                            "Case": "Median"
+                        },
+                        "Heavy": {
+                            "Case": "Sum"
+                        },
+                        "Ratio": {
+                            "Case": "Sum"
+                        }
+                    }                                        
+                }
+            }                
+            
+        
\ No newline at end of file