annotate test-data/result_2.json @ 1:4abcc674fc0b draft default tip

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 08e65e1c3975aa0a08a840f06f4118bf145308c0"
author galaxyp
date Fri, 29 Apr 2022 09:10:15 +0000
parents 65ce27f0fa01
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
1
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
2
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
3 {
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
4 "PerformLabeledQuantification": true,
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
5 "XicExtraction":
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
6 {
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
7 "ScanTimeWindow": 2.0,
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
8 "MzWindow_Da": {
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
9 "Case": "Estimate",
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
10 },
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
11 "XicProcessing": {
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
12 "Case": "Wavelet",
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
13 "Fields": [
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
14 {
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
15 "Borderpadding": {
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
16 "Case": "Some",
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
17 "Fields": [
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
18 2
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
19 ]
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
20 },
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
21 "BorderPadMethod": {
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
22 "Case": "Random"
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
23 },
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
24 "InternalPaddingMethod": {
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
25 "Case": "LinearInterpolation"
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
26 },
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
27 "HugeGapPaddingMethod": {
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
28 "Case": "Zero"
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
29 },
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
30 "HugeGapPaddingDistance": 100.0,
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
31 "MinPeakDistance": null,
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
32 "MinPeakLength": {
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
33 "Case": "Some",
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
34 "Fields": [
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
35 0.1
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
36 ]
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
37 },
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
38 "MaxPeakLength": 1.5,
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
39 "NoiseQuantile": 0.01,
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
40 "MinSNR": 0.01,
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
41 }
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
42 ]
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
43 },
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
44 "TopKPSMs": {
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
45 "Case": "Some",
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
46 "Fields": [
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
47 3
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
48 ]
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
49 }
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
50 },
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
51 "BaseLineCorrection": null
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
52 }
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
53
65ce27f0fa01 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_psmbasedquantification commit 2535f45b8a0f617a0525a88c195602a6a3978152"
galaxyp
parents:
diff changeset
54