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GalaxyP - Peptide-Spectrum Match Evaluator
==========================================

* Home: <https://bitbucket.org/galaxyp/psm_eval>
* Galaxy Tool Shed: <http://toolshed.g2.bx.psu.edu/view/galaxyp/psm_eval>
* Tool ID: `psm_eval`


Description
-----------

Contains the psm_eval tool that allows for re-evaluation of identified PSM based on multiple, flexible user supplied criteria and produces results that can be used to visualize PSMs using ProtVis.

See:

* https://github.com/jmchilton/protvis/tree/lorikeet-reintegration
* <https://bitbucket.org/Andrew_Brock/proteomics-visualise>
* Note, unrelated to: <http://mbostock.github.io/protovis/>

System dependency note: The Python package `lxml` is used, which requires these system libraries to be installed: libxml2-devel, libxslt-devel


GalaxyP Community
-----------------

Current governing community policies for [GalaxyP](https://bitbucket.org/galaxyp/) and other information can be found at:

<https://bitbucket.org/galaxyp/galaxyp>


License
-------

Copyright (c) 2014 Regents of the University of Minnesota and Authors listed below.

To the extent possible under law, the author(s) have dedicated all copyright and related and neighboring rights to this software to the public domain worldwide. This software is distributed without any warranty.

You should have received a copy of the CC0 Public Domain Dedication along with this software. If not, see <https://creativecommons.org/publicdomain/zero/1.0/>.

You can copy, modify, distribute and perform the work, even for commercial purposes, all without asking permission.


Contributing
------------

Contributions to this repository are reviewed through pull requests. If you would like your work acknowledged, please also add yourself to the Authors section. If your pull request is accepted, you will also be acknowledged in <https://bitbucket.org/galaxyp/galaxyp/CONTRIBUTORS.md> unless you opt-out.


Authors
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Authors and contributors:

* Cody Wang
* Fred Sadler
* John Chilton <jmchilton@gmail.com>
* Minnesota Supercomputing Institute, Univeristy of Minnesota