Mercurial > repos > galaxyp > regex_find_replace

changeset 5:503bcd6ebe4b draft default tip

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/regex_find_replace commit 3eaa2a2bdaeedf1b0771b1b764a550106dcbc186
author galaxyp
date Thu, 02 Feb 2023 08:21:31 +0000
parents 399da6b5ec21
children
files regex.xml regex_tabular.xml
diffstat 2 files changed, 12 insertions(+), 12 deletions(-) [+]
line wrap: on
line diff
--- a/regex.xml	Thu Jul 14 10:49:01 2022 +0000
+++ b/regex.xml	Thu Feb 02 08:21:31 2023 +0000
@@ -1,4 +1,4 @@
-<tool id="regex1" name="Regex Find And Replace" version="1.0.2" profile="21.01">
+<tool id="regex1" name="Regex Find And Replace" version="1.0.3" profile="21.01">
   <description></description>
   <requirements>
     <requirement type="package" version="3.7">python</requirement>
@@ -44,30 +44,30 @@
     </repeat>
   </inputs>
   <outputs>
-    <data format="input" name="out_file1" metadata_source="input"/>
+    <data format_source="input" name="out_file1" metadata_source="input"/>
   </outputs>
   <tests>
     <test>
-      <param name="input" value="find1.txt"/>
+      <param name="input" value="find1.txt" ftype="txt"/>
       <param name="pattern" value="(T\w+)"/>
       <param name="replacement" value="\1 \1" />
-      <output name="out_file1" file="replace1.txt"/>
+      <output name="out_file1" file="replace1.txt" ftype="txt"/>
     </test>
     <test>
-      <param name="input" value="find1.txt"/>
+      <param name="input" value="find1.txt" ftype="txt"/>
       <param name="pattern" value="f"/>
       <param name="replacement" value="'&quot;" />
-      <output name="out_file1" file="replace2.txt"/>
+      <output name="out_file1" file="replace2.txt" ftype="txt"/>
     </test>
     <test>
-      <param name="input" value="find1.txt"/>
+      <param name="input" value="find1.txt" ftype="txt"/>
       <param name="checks_0|pattern" value="a test file"/>
       <param name="checks_0|replacement" value="a file named #{input_name}" />
       <param name="checks_1|pattern" value="see here"/>
       <param name="checks_1|replacement" value="see #{input_name}" />
       <param name="checks_2|pattern" value="see (find1).txt"/>
       <param name="checks_2|replacement" value="see \1" />
-      <output name="out_file1" file="replace3.txt"/>
+      <output name="out_file1" file="replace3.txt" ftype="txt"/>
     </test>
   </tests>
   <help>
--- a/regex_tabular.xml	Thu Jul 14 10:49:01 2022 +0000
+++ b/regex_tabular.xml	Thu Feb 02 08:21:31 2023 +0000
@@ -1,4 +1,4 @@
-<tool id="regexColumn1" name="Column Regex Find And Replace" version="1.0.2" profile="21.01">
+<tool id="regexColumn1" name="Column Regex Find And Replace" version="1.0.3" profile="21.01">
   <description></description>
   <requirements>
     <requirement type="package" version="3.7">python</requirement>
@@ -46,7 +46,7 @@
     </repeat>
   </inputs>
   <outputs>
-    <data format="input" name="out_file1" metadata_source="input" />
+    <data format_source="input" name="out_file1" metadata_source="input" />
   </outputs>
   <tests>
     <test>
@@ -54,14 +54,14 @@
       <param name="field" value="2" />
       <param name="pattern" value="moo"/>
       <param name="replacement" value="cow" />
-      <output name="out_file1" file="replace_tabular_1.txt"/>
+      <output name="out_file1" file="replace_tabular_1.txt" ftype="tabular"/>
     </test>
     <test>
       <param name="input" value="find_tabular_1.txt" ftype="tabular" />
       <param name="field" value="1" />
       <param name="pattern" value="moo"/>
       <param name="replacement" value="cow" />
-      <output name="out_file1" file="replace_tabular_2.txt"/>
+      <output name="out_file1" file="replace_tabular_2.txt" ftype="tabular"/>
     </test>
   </tests>
   <help>