0
|
1 <macros>
|
|
2 <macro name="threshold">
|
|
3 <conditional name="threshold">
|
|
4 <param type="select" name="type" label="Specify Threshold">
|
|
5 <option value="none">None (just use deafults></option>
|
|
6 <option value="simple">With Simple Options</option>
|
|
7 <option value="advanced">With Advanced Options</option>
|
|
8 </param>
|
|
9 <when value="none">
|
|
10 </when>
|
|
11 <when value="simple">
|
|
12 <expand macro="simple_options" />
|
|
13 </when>
|
|
14 <when value="advanced">
|
|
15 <expand macro="simple_options" />
|
|
16 <param type="boolean" truevalue="" falsevalue="--ignore_charge_1" label="Use Charge +1" name="ignore_charge_1" checked="true" />
|
|
17 <param type="boolean" truevalue="" falsevalue="--ignore_charge_2" label="Use Charge +2" name="ignore_charge_2" checked="true" />
|
|
18 <param type="boolean" truevalue="" falsevalue="--ignore_charge_3" label="Use Charge +3" name="ignore_charge_3" checked="true" />
|
|
19 <param type="boolean" truevalue="" falsevalue="--ignore_charge_4" label="Use Charge +4 and Higher" name="ignore_charge_4" checked="true" />
|
|
20 <param name="minimum_ntt" label="Minimum Number of Enzymatic Termini (NTT)" type="integer" help="" value="0" />
|
|
21 <param name="minimum_peptide_length" label="Minimum Peptide Length" type="integer" help="" value="0" />
|
|
22 </when>
|
|
23 </conditional>
|
|
24 </macro>
|
|
25 <macro name="simple_options">
|
|
26 <param name="protein_probability" label="Protein Probability" type="float" help="" value="0.99" />
|
|
27 <param name="minimum_peptide_count" label="Minimum Peptide Count" type="integer" help="" value="2" />
|
|
28 <param name="peptide_probability" label="Peptide Probability" type="float" help="" value="0.95" />
|
|
29 </macro>
|
|
30 </macros> |