Mercurial > repos > galaxyp > searchgui
changeset 0:57249f07debd draft
Uploaded
| author | galaxyp |
|---|---|
| date | Mon, 24 Jun 2013 13:27:52 -0400 |
| parents | |
| children | 885367f91cb9 |
| files | README.md tool_dependencies.xml |
| diffstat | 2 files changed, 27 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.md Mon Jun 24 13:27:52 2013 -0400 @@ -0,0 +1,1 @@ +PeptideShaker helper scripts built using the SearchGUI framework. \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon Jun 24 13:27:52 2013 -0400 @@ -0,0 +1,26 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="SearchGUI" version="1.13.1"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://searchgui.googlecode.com/files/SearchGUI-1.13.1_mac_and_linux.zip</action> + <action type="shell_command">tar -xf SearchGUI-1.13.1_mac_and_linux.tar</action> + <action type="shell_command">cd SearchGUI-1.13.1_mac_and_linux</action> + <action type="shell_command">chmod -R o+w resources</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR/</destination_directory> + </action> + <action type="shell_command">mkdir -p $BIN_DIR</action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme> + This package downloads and installs the SearchGUI scripts develped as part of the Peptideshaker tool. + (https://github.com/jmchilton/peptide-shaker). + + </readme> + </package> +</tool_dependency>