annotate test-data/really_small.indexed_mzML @ 9:92ac8e086317 draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
author galaxyp
date Wed, 17 Feb 2021 09:50:26 +0000
parents
children b9b385097f13
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9
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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1 <?xml version="1.0" encoding="utf-8"?>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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2 <indexedmzML xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" xmlns="http://psi.hupo.org/ms/mzml">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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3 <mzML xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" version="1.1.0" id="really_small">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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4 <cvList count="2">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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5 <cv id="MS" fullName="Mass spectrometry ontology" version="4.1.41" URI="https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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6 <cv id="UO" fullName="Unit Ontology" version="09:04:2014" URI="https://raw.githubusercontent.com/bio-ontology-research-group/unit-ontology/master/unit.obo" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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7 </cvList>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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8 <fileDescription>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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9 <fileContent>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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10 <cvParam cvRef="MS" accession="MS:1000579" value="" name="MS1 spectrum" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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11 <cvParam cvRef="MS" accession="MS:1000580" value="" name="MSn spectrum" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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12 <cvParam cvRef="MS" accession="MS:1000810" value="" name="ion current chromatogram" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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13 </fileContent>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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14 <sourceFileList count="1">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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15 <sourceFile id="RAW1" name="really_small" location="file:///really_small.raw">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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16 <cvParam cvRef="MS" accession="MS:1000768" value="" name="Thermo nativeID format" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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17 <cvParam cvRef="MS" accession="MS:1000563" value="" name="Thermo RAW format" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
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92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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19 </sourceFile>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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20 </sourceFileList>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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21 </fileDescription>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
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22 <referenceableParamGroupList count="1">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
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23 <referenceableParamGroup id="commonInstrumentParams">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
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92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
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92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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26 </referenceableParamGroup>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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27 </referenceableParamGroupList>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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28 <softwareList count="1">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
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29 <software id="ThermoRawFileParser" version="1.3.2">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
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92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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31 </software>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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32 </softwareList>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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33 <instrumentConfigurationList count="1">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
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34 <instrumentConfiguration id="IC1">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
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35 <referenceableParamGroupRef ref="commonInstrumentParams" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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36 <componentList count="3">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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37 <source order="1">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
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38 <cvParam cvRef="MS" accession="MS:1000398" value="" name="nanoelectrospray" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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39 </source>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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40 <analyzer order="2">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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41 <cvParam cvRef="MS" accession="MS:1000079" value="" name="fourier transform ion cyclotron resonance mass spectrometer" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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42 </analyzer>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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43 <detector order="3">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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44 <cvParam cvRef="MS" accession="MS:1000624" value="" name="inductive detector" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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45 </detector>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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46 </componentList>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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47 </instrumentConfiguration>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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48 </instrumentConfigurationList>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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49 <dataProcessingList count="1">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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50 <dataProcessing id="ThermoRawFileParserProcessing">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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51 <processingMethod order="0" softwareRef="ThermoRawFileParser">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
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52 <cvParam cvRef="MS" accession="MS:1000544" value="" name="Conversion to mzML" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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53 </processingMethod>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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54 <processingMethod order="1" softwareRef="ThermoRawFileParser">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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56 </processingMethod>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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57 </dataProcessing>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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58 </dataProcessingList>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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59 <run id="really_small" defaultInstrumentConfigurationRef="IC1" startTimeStamp="2019-03-25T11:30:48.075Z" defaultSourceFileRef="RAW1">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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60 <spectrumList count="67" defaultDataProcessingRef="ThermoRawFileParserProcessing">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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61 <spectrum id="controllerType=0 controllerNumber=1 scan=1" index="0" defaultArrayLength="136">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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71 <scanList count="1">
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73 <scan instrumentConfigurationRef="IC1">
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galaxyp
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diff changeset
1969 </binaryDataArray>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
1970 </binaryDataArrayList>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
1971 </spectrum>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
1972 <spectrum id="controllerType=0 controllerNumber=1 scan=54" index="49" defaultArrayLength="193">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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diff changeset
1973 <cvParam cvRef="MS" accession="MS:1000511" value="1" name="ms level" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
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diff changeset
1974 <cvParam cvRef="MS" accession="MS:1000579" value="" name="MS1 spectrum" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
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diff changeset
1975 <cvParam cvRef="MS" accession="MS:1000130" value="" name="positive scan" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
1976 <cvParam cvRef="MS" accession="MS:1000285" value="662735.375" name="total ion current" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
1977 <cvParam cvRef="MS" accession="MS:1000127" value="" name="centroid spectrum" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
1978 <cvParam cvRef="MS" accession="MS:1000504" value="536.1640625" name="base peak m/z" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
1979 <cvParam cvRef="MS" accession="MS:1000505" value="84225.609375" name="base peak intensity" unitAccession="MS:1000131" unitName="number of detector counts" unitCvRef="MS" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
1980 <cvParam cvRef="MS" accession="MS:1000528" value="401.764404296875" name="lowest observed m/z" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
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diff changeset
1981 <cvParam cvRef="MS" accession="MS:1000527" value="1094.96325683594" name="highest observed m/z" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
1982 <scanList count="1">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
1983 <cvParam cvRef="MS" accession="MS:1000795" value="" name="no combination" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
1984 <scan instrumentConfigurationRef="IC1">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
1985 <cvParam cvRef="MS" accession="MS:1000016" value="1.38017916853333" name="scan start time" unitAccession="UO:0000031" unitName="minute" unitCvRef="UO" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
1986 <cvParam cvRef="MS" accession="MS:1000512" value="FTMS + c NSI Full ms [400.0000-1200.0000]" name="filter string" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
1987 <cvParam cvRef="MS" accession="MS:1000927" value="120" name="ion injection time" unitAccession="UO:0000028" unitName="millisecond" unitCvRef="UO" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
1988 <scanWindowList count="1">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
1989 <scanWindow>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
1990 <cvParam cvRef="MS" accession="MS:1000501" value="400" name="scan window lower limit" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
1991 <cvParam cvRef="MS" accession="MS:1000500" value="1200" name="scan window upper limit" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
1992 </scanWindow>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
1993 </scanWindowList>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
1994 </scan>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
1995 </scanList>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
1996 <binaryDataArrayList count="2">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
1997 <binaryDataArray encodedLength="976">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
1998 <cvParam cvRef="MS" accession="MS:1000514" value="" name="m/z array" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
1999 <cvParam cvRef="MS" accession="MS:1000523" value="" name="64-bit float" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
2000 <cvParam cvRef="MS" accession="MS:1000574" value="" name="zlib compression" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
2001 <binary>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</binary>
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galaxyp
parents:
diff changeset
2002 </binaryDataArray>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
2003 <binaryDataArray encodedLength="1228">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
2004 <cvParam cvRef="MS" accession="MS:1000515" value="" name="intensity array" unitAccession="MS:1000131" unitName="number of counts" unitCvRef="MS" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
2005 <cvParam cvRef="MS" accession="MS:1000523" value="" name="64-bit float" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
2006 <cvParam cvRef="MS" accession="MS:1000574" value="" name="zlib compression" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
2007 <binary>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</binary>
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galaxyp
parents:
diff changeset
2008 </binaryDataArray>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
2009 </binaryDataArrayList>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
2010 </spectrum>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
2011 <spectrum id="controllerType=0 controllerNumber=1 scan=55" index="50" defaultArrayLength="80">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
2012 <cvParam cvRef="MS" accession="MS:1000511" value="1" name="ms level" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
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diff changeset
2013 <cvParam cvRef="MS" accession="MS:1000579" value="" name="MS1 spectrum" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
2014 <cvParam cvRef="MS" accession="MS:1000130" value="" name="positive scan" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
2015 <cvParam cvRef="MS" accession="MS:1000285" value="204702.9375" name="total ion current" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
2016 <cvParam cvRef="MS" accession="MS:1000127" value="" name="centroid spectrum" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
2017 <cvParam cvRef="MS" accession="MS:1000504" value="536.163879394531" name="base peak m/z" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
2018 <cvParam cvRef="MS" accession="MS:1000505" value="27672.724609375" name="base peak intensity" unitAccession="MS:1000131" unitName="number of detector counts" unitCvRef="MS" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
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92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
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92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
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92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
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diff changeset
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92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
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diff changeset
2434 <cvParam cvRef="MS" accession="MS:1000523" value="" name="64-bit float" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
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diff changeset
2435 <cvParam cvRef="MS" accession="MS:1000574" value="" name="zlib compression" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
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diff changeset
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92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
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diff changeset
2437 </binaryDataArray>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
2438 </binaryDataArrayList>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
2439 </spectrum>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
2440 <spectrum id="controllerType=0 controllerNumber=1 scan=67" index="61" defaultArrayLength="1026">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
2441 <cvParam cvRef="MS" accession="MS:1000511" value="1" name="ms level" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
2442 <cvParam cvRef="MS" accession="MS:1000579" value="" name="MS1 spectrum" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
2508 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92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
2509 </binaryDataArray>
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
2510 <binaryDataArray encodedLength="7000">
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
parents:
diff changeset
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92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
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diff changeset
2512 <cvParam cvRef="MS" accession="MS:1000523" value="" name="64-bit float" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
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diff changeset
2513 <cvParam cvRef="MS" accession="MS:1000574" value="" name="zlib compression" />
92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
galaxyp
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92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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92ac8e086317 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 9bb883e027809047684fd6c45e9a6f1f3bf69351"
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galaxyp
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