comparison tool_dependencies.xml @ 0:ab43b5ba7a4e draft default tip

Initial commit.

0:ab43b5ba7a4e

<?xml version="1.0"?>
<tool_dependency>
    <package name="tint_proteomics_scripts" version="1.19.19">
        <install version="1.0">
            <actions>
              <action type="download_by_url">http://artifactory.msi.umn.edu/ext-release-local/msi/umn/edu/tint-proteomics-scripts/1.19.19/tint-proteomics-scripts-1.19.19.zip</action>
              <action type="move_directory_files">
                <source_directory>.</source_directory>
                <destination_directory>$INSTALL_DIR/</destination_directory>
              </action>
              <action type="shell_command">chmod +x $INSTALL_DIR/*cli $INSTALL_DIR/MgfFormatter</action>
              <action type="set_environment">
                <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
              </action>                
            </actions>
        </install>
        <readme>
          This package downloads and installs the proteomics scripts
          developed as part of the TINT framework
          (https://github.com/jmchilton/TINT).

          These include iQuant and the MGF formatter.
        </readme>
    </package>
</tool_dependency>