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changeset 0:ab43b5ba7a4e draft default tip

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Initial commit.
author galaxyp
date Thu, 09 May 2013 17:09:43 -0400
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 25 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu May 09 17:09:43 2013 -0400
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+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="tint_proteomics_scripts" version="1.19.19">
+        <install version="1.0">
+            <actions>
+              <action type="download_by_url">http://artifactory.msi.umn.edu/ext-release-local/msi/umn/edu/tint-proteomics-scripts/1.19.19/tint-proteomics-scripts-1.19.19.zip</action>
+              <action type="move_directory_files">
+                <source_directory>.</source_directory>
+                <destination_directory>$INSTALL_DIR/</destination_directory>
+              </action>
+              <action type="shell_command">chmod +x $INSTALL_DIR/*cli $INSTALL_DIR/MgfFormatter</action>
+              <action type="set_environment">
+                <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+              </action>                
+            </actions>
+        </install>
+        <readme>
+          This package downloads and installs the proteomics scripts
+          developed as part of the TINT framework
+          (https://github.com/jmchilton/TINT).
+
+          These include iQuant and the MGF formatter.
+        </readme>
+    </package>
+</tool_dependency>
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