Mercurial > repos > galaxyp > translate_bed
diff test-data/human_transcripts.bed @ 0:038ecf54cbec draft default tip
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteogenomics/translate_bed commit 383bb485120a193bcc14f88364e51356d6ede219
| author | galaxyp |
|---|---|
| date | Mon, 22 Jan 2018 13:59:27 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/human_transcripts.bed Mon Jan 22 13:59:27 2018 -0500 @@ -0,0 +1,19 @@ +chr1 14403 29570 ENST00000488147 1000 - 14402 14402 0,0,0 11 98,34,152,159,198,136,137,147,99,154,37 0,601,1392,2203,2454,2829,3202,3511,3864,10334,15130 WASH7P-201 none none -1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1 unprocessed_pseudogene ENSG00000227232 WASH7P unprocessed_pseudogene +chr1 29553 31097 ENST00000473358 1000 + 29552 29552 0,0,0 3 486,104,122 0,1010,1422 MIR1302-2HG-202 none none -1,-1,-1 lincRNA ENSG00000243485 MIR1302-2HG lincRNA +chr1 30266 31109 ENST00000469289 1000 + 30265 30265 0,0,0 2 401,134 0,709 MIR1302-2HG-201 none none -1,-1 lincRNA ENSG00000243485 MIR1302-2HG lincRNA +chr1 30365 30503 ENST00000607096 1000 + 30364 30364 0,0,0 1 138 0 MIR1302-2-201 none none -1 miRNA ENSG00000284332 MIR1302-2 miRNA +chr1 34553 36081 ENST00000417324 1000 - 34552 34552 0,0,0 3 621,205,361 0,723,1167 FAM138A-201 none none -1,-1,-1 lincRNA ENSG00000237613 FAM138A lincRNA +chr1 35244 36073 ENST00000461467 1000 - 35243 35243 0,0,0 2 237,353 0,476 FAM138A-202 none none -1,-1 lincRNA ENSG00000237613 FAM138A lincRNA +chr1 52472 53312 ENST00000606857 1000 + 52471 52471 0,0,0 1 840 0 AL627309.6-201 none none -1 unprocessed_pseudogene ENSG00000268020 AL627309.6 unprocessed_pseudogene +chr1 57597 64116 ENST00000642116 1000 + 57596 57596 0,0,0 3 56,157,1201 0,1102,5318 OR4G11P-202 none none -1,-1,-1 processed_transcript ENSG00000240361 OR4G11P transcribed_unprocessed_pseudogene +chr1 62948 63887 ENST00000492842 1000 + 62947 62947 0,0,0 1 939 0 OR4G11P-201 none none -1 transcribed_unprocessed_pseudogene ENSG00000240361 OR4G11P transcribed_unprocessed_pseudogene +chr1 65418 71585 ENST00000641515 1000 + 69090 70008 0,0,0 3 15,54,2549 0,101,3618 OR4F5-202 cmpl cmpl -1,-1,0 protein_coding ENSG00000186092 OR4F5 protein_coding +chr1 69054 70108 ENST00000335137 1000 + 69090 70008 0,0,0 1 1054 0 OR4F5-201 cmpl cmpl 0 protein_coding ENSG00000186092 OR4F5 protein_coding +chr1 131024 134836 ENST00000442987 1000 + 131023 131023 0,0,0 1 3812 0 CICP27-201 none none -1 processed_pseudogene ENSG00000233750 CICP27 processed_pseudogene +chr1 139789 140339 ENST00000493797 1000 - 139788 139788 0,0,0 2 58,265 0,285 AL627309.2-201 none none -1,-1 antisense_RNA ENSG00000239906 AL627309.2 antisense_RNA +chr1 157783 157887 ENST00000410691 1000 - 157782 157782 0,0,0 1 104 0 RNU6-1100P-201 none none -1 snRNA ENSG00000222623 RNU6-1100P snRNA +chr1 187890 187958 ENST00000612080 1000 - 187889 187889 0,0,0 1 68 0 MIR6859-2-201 none none -1 miRNA ENSG00000273874 MIR6859-2 miRNA +chr1 263014 297502 ENST00000424587 1000 - 263013 263013 0,0,0 4 5190,150,105,158 0,5652,26251,34330 AP006222.1-206 none none -1,-1,-1,-1 processed_transcript ENSG00000228463 AP006222.1 transcribed_processed_pseudogene +chr1 347981 348366 ENST00000458203 1000 - 347980 347980 0,0,0 1 385 0 RPL23AP24-201 none none -1 processed_pseudogene ENSG00000236679 RPL23AP24 processed_pseudogene +chr1 439869 440232 ENST00000437905 1000 + 439868 439868 0,0,0 1 363 0 WBP1LP7-201 none none -1 processed_pseudogene ENSG00000269732 WBP1LP7 processed_pseudogene +chr1 450702 451697 ENST00000426406 1000 - 450739 451678 0,0,0 1 995 0 OR4F29-201 cmpl cmpl 0 protein_coding ENSG00000284733 OR4F29 protein_coding