Mercurial > repos > gandres > vcftools_filter_stats_diversity

comparison VCFToolsSlidingWindow/vcfToolsSlidingWindow.xml @ 5:ff9c990466be draft

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planemo upload
author gandres
date Mon, 15 Feb 2016 11:29:42 -0500
parents b762ecbe2314
children ca045c1d5fa5
comparison
equal deleted inserted replaced
4:b762ecbe2314 5:ff9c990466be
1 <tool id="sniplay_vcftoolsslidingwindow" name="VCF tools SlidingWindow" version="1.1.0"> 1 <tool id="sniplay_vcftoolsslidingwindow" name="VCF tools SlidingWindow" version="1.2.0">
2 2
3 <!-- [REQUIRED] Tool description displayed after the tool name --> 3 <!-- [REQUIRED] Tool description displayed after the tool name -->
4 <description> Make diversity computation with sliding window </description> 4 <description> Make diversity computation with sliding window </description>
5 5
6 <!-- [OPTIONAL] 3rd party tools, binaries, modules... required for the tool to work --> 6 <!-- [OPTIONAL] 3rd party tools, binaries, modules... required for the tool to work -->
34 <param name="group" type="data" format="tab" optional="True" label="(optionnal) Groups" help="Each line of the file should be : Indiv;Pop" /> 34 <param name="group" type="data" format="tab" optional="True" label="(optionnal) Groups" help="Each line of the file should be : Indiv;Pop" />
35 </inputs> 35 </inputs>
36 36
37 <!-- [REQUIRED] Output files --> 37 <!-- [REQUIRED] Output files -->
38 <outputs> 38 <outputs>
39 <data name="fileout_snp" format="tabular" label="${fileout_label}.snpden" /> 39 <data name="fileout_snp" format="txt" label="${fileout_label}.snpden" />
40 <data name="fileout_taj" format="tabular" label="${fileout_label}.Tajima.D" /> 40 <data name="fileout_taj" format="txt" label="${fileout_label}.Tajima.D" />
41 <data name="fileout_tstv" format="tabular" label="${fileout_label}.TsTv" /> 41 <data name="fileout_tstv" format="txt" label="${fileout_label}.TsTv" />
42 <data name="fileout_windowed" format="tabular" label="${fileout_label}.windowed.pi" /> 42 <data name="fileout_windowed" format="txt" label="${fileout_label}.windowed.pi" />
43 <data name="filelog" format="txt" label="${fileout_label}.log" /> 43 <data name="filelog" format="txt" label="${fileout_label}.log" />
44 <data name="fileout_fst" format="txt" label="${fileout_label}.fst.txt"> 44 <data name="fileout_fst" format="txt" label="${fileout_label}.fst.txt">
45 <filter>(group != None)</filter> 45 <filter>(group != None)</filter>
46 </data> 46 </data>
47 <data name="fileout_fst_marker" format="txt" label="${fileout_label}.fst.by_marker.genes.txt"> 47 <data name="fileout_fst_marker" format="txt" label="${fileout_label}.fst.by_marker.genes.txt">