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view vcftools_main/VCFToolsStats/.svn/text-base/vcfToolsStats.sh.svn-base @ 3:612066e3f57d draft

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author gandres
date Mon, 09 Nov 2015 05:18:45 -0500
parents 3b1436a9a6e5
children
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#!/bin/bash

tool_path=$(dirname $0)

filein=$1
fileout_label=$2
fileout_annot=$3
fileout_het=$4
fileout_imiss=$5
fileout_sum=$6
filelog=$7



perl $tool_path/VCFToolsStats.pl --input $filein --out $fileout_label

cp  $fileout_label.annotation $fileout_annot ; rm $fileout_label.annotation
cp  $fileout_label.het $fileout_het ; rm $fileout_label.het
cp  $fileout_label.imiss $fileout_imiss ; rm $fileout_label.imiss
cp  $fileout_label.TsTv.summary $fileout_sum ; rm $fileout_label.TsTv.summary

cp vcftools.log $filelog
rm vcftools.log