# HG changeset patch
# User gandres
# Date 1435849665 14400
# Node ID 0f67ed444d4791158670e857a7b004fd829c4417
# Parent  3b1436a9a6e5d3863b12880e7e0dd53bcabdf81a
Uploaded

diff -r 3b1436a9a6e5 -r 0f67ed444d47 vcftools_main/VCFToolFilter/vcfToolsFilter.xml
--- a/vcftools_main/VCFToolFilter/vcfToolsFilter.xml	Thu Jul 02 05:21:40 2015 -0400
+++ b/vcftools_main/VCFToolFilter/vcfToolsFilter.xml	Thu Jul 02 11:07:45 2015 -0400
@@ -110,10 +110,9 @@
 
 .. class:: infomark
 
-**Authors** Dereeper Alexis
+**Authors**     Adam Auton, Petr Danecek and Anthony Marcketta (C++ Module) : .. _VCFtools: http://vcftools.sourceforge.net
 
- | Dereeper et al. 2015 in prep.
-
+ | ** Please cite ** "The Variant Call Format and VCFtools", Petr Danecek, Adam Auton, Goncalo Abecasis, Cornelis A. Albers, Eric Banks, Mark A. DePristo, Robert Handsaker, Gerton Lunter, Gabor Marth, Stephen T. Sherry, Gilean McVean, Richard Durbin and 1000 Genomes Project Analysis Group, ** Bioinformatics **, 2011 
 
 .. class:: infomark
 
@@ -135,7 +134,9 @@
 Description
 -----------
 
-  Filter VCF file 
+  | Filter VCF file 
+  | For further informations on VCFtools, please visite the VCFtools website.
+  | .. _VCFtools: http://vcftools.sourceforge.net
 
 -----------------
 Workflow position
diff -r 3b1436a9a6e5 -r 0f67ed444d47 vcftools_main/VCFToolsSlidingWindow/vcfToolsSlidingWindow.xml
--- a/vcftools_main/VCFToolsSlidingWindow/vcfToolsSlidingWindow.xml	Thu Jul 02 05:21:40 2015 -0400
+++ b/vcftools_main/VCFToolsSlidingWindow/vcfToolsSlidingWindow.xml	Thu Jul 02 11:07:45 2015 -0400
@@ -62,10 +62,9 @@
 
 .. class:: infomark
 
-**Authors** Dereeper Alexis 
+**Authors**     Adam Auton, Petr Danecek and Anthony Marcketta (C++ Module) : .. _VCFtools: http://vcftools.sourceforge.net
 
- | Dereeper et al. 2015 in prep.
-
+ | ** Please cite ** "The Variant Call Format and VCFtools", Petr Danecek, Adam Auton, Goncalo Abecasis, Cornelis A. Albers, Eric Banks, Mark A. DePristo, Robert Handsaker, Gerton Lunter, Gabor Marth, Stephen T. Sherry, Gilean McVean, Richard Durbin and 1000 Genomes Project Analysis Group, ** Bioinformatics **, 2011 
 
 .. class:: infomark
 
@@ -86,7 +85,9 @@
 Description
 -----------
 
-  Compute statistics on VCF file 
+  | Compute statistics on VCF file 
+  | For further informations on VCFtools, please visite the VCFtools website.
+  | .. _VCFtools: http://vcftools.sourceforge.net
 
 -----------------
 Workflow position
diff -r 3b1436a9a6e5 -r 0f67ed444d47 vcftools_main/VCFToolsStats/vcfToolsStats.xml
--- a/vcftools_main/VCFToolsStats/vcfToolsStats.xml	Thu Jul 02 05:21:40 2015 -0400
+++ b/vcftools_main/VCFToolsStats/vcfToolsStats.xml	Thu Jul 02 11:07:45 2015 -0400
@@ -60,10 +60,9 @@
 
 .. class:: infomark
 
-**Authors** Dereeper Alexis 
+**Authors**     Adam Auton, Petr Danecek and Anthony Marcketta (C++ Module) : .. _VCFtools: http://vcftools.sourceforge.net
 
- | Dereeper et al. 2015 in prep.
-
+ | ** Please cite ** "The Variant Call Format and VCFtools", Petr Danecek, Adam Auton, Goncalo Abecasis, Cornelis A. Albers, Eric Banks, Mark A. DePristo, Robert Handsaker, Gerton Lunter, Gabor Marth, Stephen T. Sherry, Gilean McVean, Richard Durbin and 1000 Genomes Project Analysis Group, ** Bioinformatics **, 2011 
 
 .. class:: infomark
 
@@ -84,7 +83,9 @@
 Description
 -----------
 
-  Compute statistics on VCF file 
+  | Compute statistics on VCF file 
+  | For further informations on VCFtools, please visite the VCFtools website.
+  | .. _VCFtools: http://vcftools.sourceforge.net
 
 -----------------
 Workflow position
diff -r 3b1436a9a6e5 -r 0f67ed444d47 vcftools_main/tool_dependencies.xml
--- a/vcftools_main/tool_dependencies.xml	Thu Jul 02 05:21:40 2015 -0400
+++ b/vcftools_main/tool_dependencies.xml	Thu Jul 02 11:07:45 2015 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="vcftools" version="0.1.12b">
-        <repository changeset_revision="a655cb1dfc58" name="package_vcftools_0_1_12b" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu/" />
+        <repository changeset_revision="a655cb1dfc58" name="package_vcftools_0_1_12b" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu/" />
     </package>
 </tool_dependency>