# HG changeset patch
# User gandres
# Date 1460532779 14400
# Node ID ce984119f66930b2a376a20ac84e9c752ec5df57
# Parent  2b6bb9d5e4e9ca99a55f1b228b844ff4cc398231
planemo upload

diff -r 2b6bb9d5e4e9 -r ce984119f669 VCFToolFilter/find_indiv.py
--- a/VCFToolFilter/find_indiv.py	Tue Apr 12 05:43:01 2016 -0400
+++ b/VCFToolFilter/find_indiv.py	Wed Apr 13 03:32:59 2016 -0400
@@ -12,9 +12,8 @@
 
 def get_field_chrs_options(dataset):
         options = []
-        chrs=os.popen("grep '##contig' %s"%dataset.file_name).read()[:-1].split('\n')
-        for line in chrs:
-		opt=re.search('^##contig=<ID=(\w+),length=',line).group(1)
+        chrs=os.popen("grep -v '#' %s | cut -f1 | sort -u "%dataset.file_name).read()[:-1].split('\n')
+        for opt in chrs:
                 options.append((opt,opt, True))
         return options
 
diff -r 2b6bb9d5e4e9 -r ce984119f669 VCFToolsStats/vcfToolsStats.xml
--- a/VCFToolsStats/vcfToolsStats.xml	Tue Apr 12 05:43:01 2016 -0400
+++ b/VCFToolsStats/vcfToolsStats.xml	Wed Apr 13 03:32:59 2016 -0400
@@ -67,8 +67,8 @@
 ---------------------------------------------------
 
 
-================
-VCF tools filter
+===============
+VCF tools Stats
 ================
 
 -----------