comparison WebServiceToolWorkflow/WebServiceTool1.xml~ @ 0:d5cd409b8a18 default tip

Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository

0:d5cd409b8a18

<tool id="WebServiceTool_input_url" name="Step 1:Enter information about tool">
  <description> This tool takes the URL of an external Web service. The URL should point to the description document of a Web service. Currently support for only REST Web services is provided. Therefore, this description document can be a WADL or WSDL 2.0 or SAWADL document only.</description>
  <command interpreter="python">
        WebServiceTool_input_url.py 
        $url
        $output
  </command>
  <inputs>
       <param format="text" size = "60" name = "url" type="text" label="Enter the tool description document location" help="see tip below"/>
  </inputs>
  <outputs>
    <data format="tabular" name="output" />
  </outputs>

  <tests>
    <test>    
      <param name="url" value="127.0.0.1:5001/hello/form"/>
      <output name="output" file="outtest"/>
    </test>
  </tests>

  <help>
  
.. class:: infomark

**TIP:** Enter the url (of the REST Web service) description document of type WADL, WSDL 2.0, or SAWADL in the above box.


All the Web services come with a description document like WADL or WSDL document. Galaxy can read this information
to create the tool.

For further assistance find samples of WADL, WSDL 2.0 and SAWADL below.

WADL :   DDBJ sample services:

	 http://cs.uga.edu/__tilda__ganjoo/galaxy/DDBJBlast.wadl


         http://cs.uga.edu/__tilda__ganjoo/galaxy/DDBJGetEntry.wadl


         http://cs.uga.edu/__tilda__ganjoo/galaxy/DDBJNCBIGenomeAnnotationGetGeneList.wadl


         http://cs.uga.edu/__tilda__ganjoo/galaxy/Ensembl.wadl
         
         
         More detailed information about all REST services at DDBJ can be found at http://www.xml.nig.ac.jp/index.html


         EuPathDB sample services:
         
         http://eupathdb.org/webservices/GeneQuestions/GenesByMolecularWeight.wadl
  

         http://eupathdb.org/eupathdb/webservices/GeneQuestions/GenesByTextSearch.wadl
         
         
         More detailed information about all REST services at EuPathDB can be found at http://eupathdb.org/eupathdb/serviceList.jsp


SAWADL : 

         http://cs.uga.edu/__tilda__ganjoo/galaxy/GenesByTextSearch.sawadl


WSDL 2.0 : 

         http://cs.uga.edu/__tilda__ganjoo/galaxy/booklist.wsdl

*NOTE: Step 1, Step 2 and Step 3 merely add this tool to Galaxy. To use the tool, after completing Step 3, go to the Tools section on left
and find the tool under Web Service Tools and Web Service Workflow Tools.*

  </help>

</tool>