diff WebServiceToolWorkflow/WebServiceTool_input_method.py~ @ 0:d5cd409b8a18 default tip

Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/WebServiceToolWorkflow/WebServiceTool_input_method.py~	Tue Jun 07 18:00:50 2011 -0400
@@ -0,0 +1,85 @@
+import warnings
+import platform
+import os,sys
+from generateClient import *
+from generateClient1 import *
+
+'''input : wadl/wsdl/sawadl-url, method name
+purpose: 
+1. Calls methods from generateClient1.py to generate client description for one-time invocation
+of the Web service. This client description is added as a xml file under ./clients/
+2. Calls methods from generateClient.py to generate client description for invocation of Web service
+in a workflow. This client description is added as a xml file under ./workflowclients/
+3. Adds the path to the above xml files to Galaxy tool-conf.xml file using call edit_tool_conf.py
+'''
+
+#read the url passed as an argument
+url = sys.argv[2]
+urllist = url.split('.')
+
+clientGenerator = ClientGenerator(sys.argv[2],sys.argv[3],sys.argv[4],sys.argv[5])
+clientGenerator1 = ClientGenerator1(sys.argv[2],sys.argv[3],sys.argv[4],sys.argv[5])
+
+if urllist[len(urllist)-1]=='wadl' or urllist[len(urllist)-1]=='WADL':
+    javahome = os.environ.get('JAVA_HOME')
+    galaxyhome=os.environ.get('GALAXY_HOME')
+    classpath= galaxyhome + '/tools/WebServiceToolWorkflow/ParserForWADL/bin'
+    jarpath = galaxyhome + '/tools/WebServiceToolWorkflow/ParserForWADL/lib/'
+    machine = platform.machine()
+
+#start JVM depending on the machine. The location of libjvm.so is assumed to be standard.
+#you can replace lines 32 to 41, with startJVM("LOCATION OF YOUR LIBJVM.SO","-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)       
+    if machine == 'x86_64' :
+        print 'a'
+        startJVM("%s/jre/lib/amd64/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)
+    elif machine == 'i686' :
+        print 'b'
+        startJVM("%s/jre/lib/i386/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)
+    elif machine == 'sun4u' :
+        startJVM("%s/jre/lib/sparc/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)
+    else :
+        System.exit("Could not identify machine, please specify path to libjvm.so")
+        
+    clientGenerator1.wadlClient()
+    clientGenerator.wadlClient()
+        
+elif urllist[len(urllist)-1]=='wsdl' or urllist[len(urllist)-1]=='WSDL':
+    clientGenerator.wsdlClient()
+    clientGenerator1.wsdlClient()    
+elif urllist[len(urllist)-1]=='sawadl' or urllist[len(urllist)-1]=='SAWADL':
+
+    javahome = os.environ.get('JAVA_HOME')
+    galaxyhome=os.environ.get('GALAXY_HOME')
+    classpath= galaxyhome + '/tools/WebServiceToolWorkflow/lib/SAWADLParser/bin'
+    jarpath = galaxyhome + '/tools/WebServiceToolWorkflow/lib/'
+    machine = platform.machine()
+    
+    if machine == 'x86_64' :
+        print 'a'
+        startJVM("%s/jre/lib/amd64/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)
+    elif machine == 'i686' :
+        print 'b'
+        startJVM("%s/jre/lib/i386/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)
+    elif machine == 'sun4u' :
+        startJVM("%s/jre/lib/sparc/server/libjvm.so" % javahome,"-ea", "-Djava.class.path=%s" % classpath,"-Djava.ext.dirs=%s" % jarpath)
+    else :
+        print 'c'
+        System.exit("Could not identify machine, please specify path to libjvm.so")    
+    
+    #f=open(sys.argv[5],'w')
+    #f.write('reached here 2 \t')
+    #f.close()
+    
+    clientGenerator.sawadlClient()
+    clientGenerator1.sawadlClient()    
+    #f=open(sys.argv[5],'w')
+    #f.write('reached here 3')
+    #f.close()
+    
+    shutdownJVM()
+
+
+
+
+
+