Mercurial > repos > gbcs-embl-heidelberg > je_clip
annotate je @ 2:b61628ae2371 draft
planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit 62411561ae3bc65ea8762d27ec79a7d912503e5b
author | gbcs-embl-heidelberg |
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date | Wed, 07 Dec 2016 11:57:50 -0500 |
parents | dfacabbde112 |
children | 2cfed59e4d27 |
rev | line source |
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0 | 1 #!/bin/sh |
2 # Wrapper around je_1.0_bundle.jar | |
3 | |
4 # where are we stored ? | |
5 DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )" | |
6 # echo $DIR | |
7 # path to jar file to execute, this jar is supposed to be in the same dir as this script | |
8 JAR_FILE=$DIR"/je_1.0_bundle.jar" | |
9 | |
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dfacabbde112
use _JAVA_OPTIONS to set default memory limit
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10 # set default _JAVA_OPTIONS |
dfacabbde112
use _JAVA_OPTIONS to set default memory limit
gbcs-embl-heidelberg
parents:
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changeset
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11 _JAVA_OPTIONS=${_JAVA_OPTIONS:-'-Xmx4G -Xms256m'} |
dfacabbde112
use _JAVA_OPTIONS to set default memory limit
gbcs-embl-heidelberg
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12 export _JAVA_OPTIONS |
dfacabbde112
use _JAVA_OPTIONS to set default memory limit
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13 |
dfacabbde112
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14 # uncomment to change logging level using your own log4j.xml found in $DIR file |
dfacabbde112
use _JAVA_OPTIONS to set default memory limit
gbcs-embl-heidelberg
parents:
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changeset
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15 # OPTS="-Dlog4j.configuration=file:$DIR/log4j.xml" |
0 | 16 |
17 java $OPTS -jar $JAR_FILE "$@" | |
18 exit $? |