Mercurial > repos > gbcs-embl-heidelberg > je_clip
comparison je-clip.xml @ 2:b61628ae2371 draft
planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit 62411561ae3bc65ea8762d27ec79a7d912503e5b
| author | gbcs-embl-heidelberg |
|---|---|
| date | Wed, 07 Dec 2016 11:57:50 -0500 |
| parents | 101525093ba1 |
| children | 2cfed59e4d27 |
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| 1:dfacabbde112 | 2:b61628ae2371 |
|---|---|
| 19 | 19 |
| 20 @common_options_cmd@ | 20 @common_options_cmd@ |
| 21 @barcode_len_cmd@ | 21 @barcode_len_cmd@ |
| 22 ADD=${ADD} | 22 ADD=${ADD} |
| 23 #if str($ADD) == "false": | 23 #if str($ADD) == "false": |
| 24 BARCODE_RESULT_FILENAME=$BARCODE_RESULT_FILENAME | 24 BARCODE_RESULT_FILENAME=${BARCODE_RESULT_FILENAME} |
| 25 #end if | 25 #end if |
| 26 | 26 |
| 27 OF1=${OF1} | 27 OF1=${OF1} |
| 28 #if str( $library.type ) != "single": | 28 #if str( $library.type ) != "single": |
| 29 OF2=${OF2} | 29 OF2=${OF2} |
| 52 <expand macro="common_options"/> | 52 <expand macro="common_options"/> |
| 53 | 53 |
| 54 | 54 |
| 55 </inputs> | 55 </inputs> |
| 56 <outputs> | 56 <outputs> |
| 57 <data name="BARCODE_RESULT_FILENAME" format="tabular" label="Je-Clipped Barcodes"/> | 57 <data name="BARCODE_RESULT_FILENAME" format="tabular" label="Je-Clipped Barcodes"> |
| 58 <data name="OF1" format_source="input_1" label="Je-Clipped {on_string}"/> | 58 <filter>!ADD</filter> |
| 59 <data name="OF2" format_source="input_1" label="Je-Clipped {on_string}"> | 59 </data> |
| 60 <filter>(type != "single")</filter> | 60 <data name="OF1" format_source="input_1" label="Je-Clip OF1: ${on_string}"/> |
| 61 <data name="OF2" format_source="input_2" label="Je-Clip OF2: ${on_string}"> | |
| 62 <filter>library["type"] != "single"</filter> | |
| 61 </data> | 63 </data> |
| 62 </outputs> | 64 </outputs> |
| 63 | 65 |
| 64 <tests> | 66 <tests> |
| 65 <test> | 67 <test> |