comparison je-demultiplex.xml @ 5:222819c87d90 draft

planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit 0eefd837333dae6fbecaf4f55b053268d844eff6

4:6da7b7886cbf

<tool id="je_demultiplex" name="Je-Demultiplex" version="@VERSION_STRING@">
    <description>demultiplexes fastq files</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <stdio>
        <exit_code range="1:" level="fatal" description="Tool exception" />
    </stdio>
    <version_command>echo '1.0'</version_command>
    <command interpreter="bash">
<![CDATA[
    je demultiplex

    ## Fastq inputs
    @single_or_paired_cmd@

                <discovered_dataset designation="sample1_CACTGTGTATAG_1" file="sample1_CACTGTGTATAG_1.txt"/>
            </output>
        </test>
    </tests>


  <help>
<![CDATA[
**What it does**

Je demultiplex: A fastq file demultiplexer with optional handling of Unique Molecular Identifiers for further use
in 'markdupes' module.

    barcoded.
    N.B: this file will have a size of about one of the fastq input files.

    Default value: null.
]]>
  </help>

</tool>

5:222819c87d90

<tool id="je_demultiplex" name="Je-Demultiplex" version="@VERSION_STRING@">
    <description>demultiplexes fastq files</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <stdio>
        <exit_code range="1:" level="fatal" description="Tool exception" />
    </stdio>
    <expand macro="version_command" />
    <command>
<![CDATA[
    je demultiplex

    ## Fastq inputs
    @single_or_paired_cmd@

                <discovered_dataset designation="sample1_CACTGTGTATAG_1" file="sample1_CACTGTGTATAG_1.txt"/>
            </output>
        </test>
    </tests>

    <help>
<![CDATA[
**What it does**

Je demultiplex: A fastq file demultiplexer with optional handling of Unique Molecular Identifiers for further use
in 'markdupes' module.

    barcoded.
    N.B: this file will have a size of about one of the fastq input files.

    Default value: null.
]]>
    </help>
    <expand macro="citations"/>
</tool>