Mercurial > repos > gbcs-embl-heidelberg > je_markdupes
comparison je @ 4:384b972e43bc draft
planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit 1c7680ac36888721d2c0b72f4e6d27415fe07b43
| author | gbcs-embl-heidelberg |
|---|---|
| date | Tue, 01 Aug 2017 03:43:03 -0400 |
| parents | 4ccf1406832d |
| children |
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| 3:4ccf1406832d | 4:384b972e43bc |
|---|---|
| 3 | 3 |
| 4 # where are we stored ? | 4 # where are we stored ? |
| 5 DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )" | 5 DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )" |
| 6 # echo $DIR | 6 # echo $DIR |
| 7 # path to jar file to execute, this jar is supposed to be in the same dir as this script | 7 # path to jar file to execute, this jar is supposed to be in the same dir as this script |
| 8 JAR_FILE=$DIR"/je_1.1_bundle.jar" | 8 JAR_FILE=$DIR"/je_1.2_bundle.jar" |
| 9 | 9 |
| 10 # set default _JAVA_OPTIONS | 10 # set default _JAVA_OPTIONS |
| 11 _JAVA_OPTIONS=${_JAVA_OPTIONS:-'-Xmx4G -Xms256m'} | 11 _JAVA_OPTIONS=${_JAVA_OPTIONS:-'-Xmx4G -Xms256m'} |
| 12 export _JAVA_OPTIONS | 12 export _JAVA_OPTIONS |
| 13 | 13 |