Mercurial > repos > gbcs-embl-heidelberg > je_markdupes
comparison je @ 3:4ccf1406832d draft
planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52-dirty
| author | gbcs-embl-heidelberg |
|---|---|
| date | Wed, 21 Jun 2017 05:23:33 -0400 |
| parents | c6afeeade4f2 |
| children | 384b972e43bc |
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| 2:f6bc74863c1c | 3:4ccf1406832d |
|---|---|
| 1 #!/bin/sh | 1 #!/bin/sh |
| 2 # Wrapper around je_1.0_bundle.jar | 2 # Wrapper around je_1.1_bundle.jar |
| 3 | 3 |
| 4 # where are we stored ? | 4 # where are we stored ? |
| 5 DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )" | 5 DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )" |
| 6 # echo $DIR | 6 # echo $DIR |
| 7 # path to jar file to execute, this jar is supposed to be in the same dir as this script | 7 # path to jar file to execute, this jar is supposed to be in the same dir as this script |
| 8 JAR_FILE=$DIR"/je_1.0_bundle.jar" | 8 JAR_FILE=$DIR"/je_1.1_bundle.jar" |
| 9 | 9 |
| 10 # set default _JAVA_OPTIONS | 10 # set default _JAVA_OPTIONS |
| 11 _JAVA_OPTIONS=${_JAVA_OPTIONS:-'-Xmx4G -Xms256m'} | 11 _JAVA_OPTIONS=${_JAVA_OPTIONS:-'-Xmx4G -Xms256m'} |
| 12 export _JAVA_OPTIONS | 12 export _JAVA_OPTIONS |
| 13 | 13 |