Mercurial > repos > gbcs-embl-heidelberg > je_markdupes

diff test-data/illu_file_1_sequence.txt @ 0:d39a96961423 draft

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Initial upload
author gbcs-embl-heidelberg
date Wed, 25 Nov 2015 12:36:12 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/illu_file_1_sequence.txt	Wed Nov 25 12:36:12 2015 -0500
@@ -0,0 +1,100 @@
+@D3FCO8P1:229:C49NHACXX:8:1101:1347:2097 1:N:0:
+GTCATATCAATGCCAATAGCAATGAAACCACCCATANAANNNNNACGGCTGAACANNNNNNNACNNGATATAGCATAAATGNANNNTNNNNANTNNNNNN
++
+CCCFFFFFHHHHHJJJJJJJJJJJIJJJIJJJJJJI#1?#####00?FHIJJJJI#######--##,,=A=CDDDDDDDEE###################
+@D3FCO8P1:229:C49NHACXX:8:1101:1406:2140 1:N:0:
+ATTTAAAATTTATCTCTTTTCATATAACTCTCTGGTAATNNNNAACATAAAACCGANCGCACATGATAATTCTTCCAAATTTATATATNAATTTTATANN
++
+BBCFFFDFHHHGHHIJJJJJJIJIJIGHHHIJJJJGGIJ####11?DHHIIIIGHI#-<FEHGIJIJHGHFHHHHHFFFFFFEFEEEE#,;?BDDFDE##
+@D3FCO8P1:229:C49NHACXX:8:1101:1418:2170 1:N:0:
+GTTCCATGTAAAGTAGCTAATCAACTAAAAATTTTAATTCCAGTAGGAACTGCAATNATTATAGTAGCTGAGGTAAAATAAGCTCGAGTATCTACATCTA
++
+CCCFFFFFHHHHHIJJJJJJJJJJJJIJJJJJJJJJJJJIJJJIIJJJJJJJJJJI#0?FHIJJJJJJJJGIJHIIJJJHHHHHHFFD@CEEEFDDDDDC
+@D3FCO8P1:229:C49NHACXX:8:1101:1385:2179 1:N:0:
+CCCCACACCAGACTTGTGGGGCGACTGTTCAGGCCGTGTAGGGCATTCAGGGGTAGCATGGGAGCAGCTAGATTAGATGCAGATCTCTGAGAAGCTGTCT
++
+=?@D;DBDDBFDFIIEF??8@EFGFHFGAFFGGIHH;5.=CEE),7.;(;ACB9>?CAAC??9?B@9??C:(:@A::@CC:4+:>@C@AAC(>9?CCCC@
+@D3FCO8P1:229:C49NHACXX:8:1101:1452:2184 1:N:0:
+GGTAGAGTGGGAAAGGGAAGGGCAAGGGGGAGGGGAAGAATTTAACCGGGCGGGAGGAGAATCGGGCAGGGAAGAATGGTTGGTTGGTGGAACAACTGAA
++
+BB=DDDEDHHHDHJJGIGIJCBDHEHGJJJBGEHIBGGHFGFFGGHFFDD>?BDBBDDDDDD@ADD;>@D98AB?CCDD:CBB<ADD8<?<@?B?ACDCA
+@D3FCO8P1:229:C49NHACXX:8:1101:1370:2193 1:N:0:
+TTCCTTGCGAGTGTTTGCACGATTATCTCATATTCAAACTGGTCAACATGGGCATACGATTTCTTGCGCTCCTTGCTTTCAAACAGCCTGTCTCTTATAC
++
+CCCFFFF+CFHFHIIJJJJJJIJJIJJJJJJJJJJIJJJJJJBGIJJJJJJJJJJJJJJJJIJJJJHHFFFDEEEDDDDDDDDDDDBBDDDDDDDDDDDD
+@D3FCO8P1:229:C49NHACXX:8:1101:1486:2204 1:N:0:
+CTTATTCATCTGTTGCTCATATAGGAATTGTTCTATCAGGACTTTTAACTATAACTTATTGAGGTTTATGTGGTTCTTATACATTAATAATTGCTCATGG
++
+@BCFFFDFHHHGHJJIJJJJJJJJJJJJJJJJJJIJJJJJJJIJJJIJJJJJJIJJJJJJIJJJHIJJJJHIIHHHHIJJJIJJHHHHHHFFFFEFCEEE
+@D3FCO8P1:229:C49NHACXX:8:1101:1460:2207 1:N:0:
+TTACTTGTCGTTGTGATACTAAACTTTCTCAAATAATAAAAAAAAAGAATAAAATTCCTAATAATGAAATAGTTGATCCAATAGTTGATACAATATTTCA
++
+@BCFFFFFHHHGHIIGIJJIIJJJJJJIIHIIJHGIHGJIJIJJJHGCCHIGGEHH>EEFFFFFFFACCEACEDCDCCCCCDCDEEDDDE(:ACCD:@D@
+@D3FCO8P1:229:C49NHACXX:8:1101:1339:2211 1:N:0:
+ATTCAAAGTAAATTAAATGCGAAAATAAAAGGCAGCATGAGNTANTTACTNAAANGGGGTCATNAACAGTACTTGTGCTCCNCCANGTCGNCGNTNCNCT
++
+@@CFFFFFFHHHHJJJIJJJJJJJIJIJJJJJJJJJJJJJJ#0?#0?DHI#-;F#-;DH?EFH#,;BCDEEEEEDDCCCDD#,8?#,5?B##########
+@D3FCO8P1:229:C49NHACXX:8:1101:1402:2222 1:N:0:
+GTTAAAATAGTAATAATATTACCTAATACAAATAATGAAATATCATATTGATGAAATCATTTTACTATACCTGATACAGTTGTTATAGCTCCGATAGCTC
++
+CCCFFFFDFHHHHJJIIJJJGJIIJJIIJHIJIJIJIIJJJJJJJIIJJIGGHIJJJIJGJJIIIHIIHJ>GHIIIIIIGGGIIJJJJIH)=ABDDDDEE
+@D3FCO8P1:229:C49NHACXX:8:1101:1388:2233 1:N:0:
+AACAACAATTTAATGCAATTACCAATCTTACAAGTTATTATACCAATAATTGCATCTATGTTTTGCTTTCTTGACAAGAAACACAAGGTAACTTGGGTTA
++
+1?8ADDDD<DFDFB<?:EIBHHIIFF:AHI?HC<*:1:EF@G49D<B3?@F4?BDD*BG*?B??B<B8888@F)).@;@;@;=6?###############
+@D3FCO8P1:229:C49NHACXX:8:1101:1497:2240 1:N:0:
+GTCGTTGGCATCGTTGCTGCTCTTAACGTCCAAATGGACGGGCGACTCCCCGAACATTGCCTCGAGTCGTGTCTCCACGGATTTCTGGACGTCCGAATCG
++
+CCCFFFFFHHHHHJJJIIIJIHGIJJIHHJJJHIJJJFHIJJBHGGHHHHFEDDDDDDDDDDDDDDCCBDDDDDDDDDDDDDDDDEDD@BDDDDBB@BBD
+@D3FCO8P1:229:C49NHACXX:8:1101:1399:2245 1:N:0:
+GAATATAAATATAAAGTATAAGCAGCTCTAAAAAAAGATAAAAAAGATAATAAAATTATAGAAATTCAAGATCAAGAAACAATTCTATTTAATAAAGAAA
++
+@@CFFFFFFBDFHGIGHGJIJJJJJIIDHHIJJIGGHEEGGIIIIGGDHIGE@FHHIIJJFGGHGHCAHH@D;CD;CCCECDDCCDDDCD3>ACAA:@?C
+@D3FCO8P1:229:C49NHACXX:8:1101:1664:2088 1:N:0:
+CTATAAAAGTTTATAAATGGCAACCTTAAGTGTAANNNANNNNNTATGCACAGNANNNNNNNNANNNATGCAAAACGACTCNNNNNNNNNNNNCNNNNNN
++
+CCCFFFFFHHHHHJJJJJJJJJJJJJJJJJIIHIJ###1#####20?FHJJJJ#.########-###--;BDFEEECDDDD###################
+@D3FCO8P1:229:C49NHACXX:8:1101:1512:2095 1:N:0:
+TCCAAGACGTTCATAAGATACATTAGCTAAACAAAANAANNNNNAAGAACATAAANNNNNNNCANNTATTAATGTATAAGANCNNNANNNNCNTNNNNNN
++
+CC@FFFFFHHHHHJJJJJJIJJJJIJJJJIJJJJJJ#1C#####00?FIJJJJJJ#######--##,5?DDEEEFCFFEDD###################
+@D3FCO8P1:229:C49NHACXX:8:1101:1630:2114 1:N:0:
+GTCCAACGTTGGAGGAGGAGCCGCCATGAATGCCCTGCGNNNNTTCTACCTGGAGANNNCGGTGGTCACACGAGCCTACACCACGGTCNNCGTGCTNNNN
++
+CCCFFFFFHHHHGJJGHJGHIJJJJJJJJJJJJJJJJJJ####.-;DHIJJHHHHH###,,=?BDBDDDDDDDDDDDDDDDDDDDDDD##+28@DD####
+@D3FCO8P1:229:C49NHACXX:8:1101:1540:2119 1:N:0:
+CATATATGGACTCAAGACCTAATTGCATTAACCGTCTGTNNNNTACGTAGCGTATGNNATTGCGCACTTCTTCTGCGGATAGTCCTTCNNCATCTCNNNN
++
+CCCFFFFFHHHHHJJJJJJJJJJJJJJJJJJJJJJJJIJ####20?GHIJJJIJIJ##-5CEFHFFDDEEDDDDDDDDDDDDDEDDDD##+2?BDD####
+@D3FCO8P1:229:C49NHACXX:8:1101:1503:2124 1:N:0:
+TACTTATACATATACTTATAGGCATACTTATACGACTTCNNNNCCCGGTTAATATGNNGTGGCCCGTATAAGTTAATGGGCACAACCGNNTGGGACNNNN
++
+CCCFFFFFHHHHHIJJJJJJJJJJJIJJJJJJJJJJJJJ####00BFHGIIJJJJJ##--BEHJJHDFFEDEEFEEEDDDDDDDDDDD##+2<B@B####
+@D3FCO8P1:229:C49NHACXX:8:1101:1671:2150 1:N:0:
+CACCATTCCACTCGCATGTGTATCTAATGAATGCCTCAANACGCTCCTGAACGCAANCAGGTATGTGTGGTAGACCAAAAAAAAAAAANCGGCAGGTANN
++
+CCCFFFFFHHHHHJJJJJJJHIJJJJJJJJJJJJJJJJJ#2?FHIJJJJHIJJJJJ#.;DHCHHHHHHHFDFFEEEEDDDDDDDDDDD############
+@D3FCO8P1:229:C49NHACXX:8:1101:1552:2151 1:N:0:
+AAGCATAACTTAAGGCTGAAAATTATTTATTTGACTTGTGTCAAATATAAAAATGTNTTGTGTAGAAACGGTAATGTGAAATTAATGTNAAATATTCTNN
++
+CCCFFFFFHHHHHJJJJJJJJJJJJJJJJJJIIIJJJJHIJJJJIJIJJJIJIJJI#0?FGIIJJJJJJIIEIJJHHHGHHHFFFFFF#,;ABDEDEE##
+@D3FCO8P1:229:C49NHACXX:8:1101:1700:2159 1:N:0:
+GTACTGTGCAATGCAAGTGGATTAGAGGATTGCAGCTGGAGGGGTAACAGCAGTGCNTTCGAAATATGTATCTTACAGCATTTCTGGGNTCCTCGTCCGN
++
+CCCFFFFFHHHHHJJJJHIIIIJIJIJJJJJJJJJJJJJFHJJJ?FHCFFHGIGHC#-5;DHHFHHHFCDFFFFFEEEECEDCDCCDC#,8<BBDABB##
+@D3FCO8P1:229:C49NHACXX:8:1101:1652:2170 1:N:0:
+CTCCACCTCTTGGGTGTATTGGTTGGCCGTTTTACTCTTTTGTTGGAGACTGAGAANCTTAGCTGATATAACTTCTACCGATTCTCCTTTAACTGCACTT
++
+?@@FFDFFHFHHHI?FEEEHHIHHGIEGHHIJJHIIGIIIJFGIJJHIIIEHIIHG#-;CEHHHHDFFFFFDEEC@CECDD?@CDD@CACDCDDDDCDDD
+@D3FCO8P1:229:C49NHACXX:8:1101:1537:2174 1:N:0:
+CATACGAAATGACCAAATCCTAGGTGTTTGAGCGCGGACTGGAGGCGATTCCGCTGTCCGTGGATCTGTGGATCCACTACCTAATGCACGTTAAGTCCAA
++
+@@@DADDDHHAHHGGB@BHIIIFE<AHHI;4?9DHGE@A;AHGEHEE>AC@@CB@BBA@?BBBBA@CCDCCCCC<493?CCCCCC>:>A<8???AC####
+@D3FCO8P1:229:C49NHACXX:8:1101:1563:2176 1:N:0:
+GTCTCAGGAAGAGAAAAAAATATAAAGTGTCAAGGGGCGTGTGCAGCGACACTTCGCCGACCCCTCCCCACATTATTTTTTTGCCGCCCGCTGGTAGCAG
++
+;@@BDDDA:DBFDF;A<A@EGGB@:?D1:D?9:BGIDGE4@###########################################################
+@D3FCO8P1:229:C49NHACXX:8:1101:1587:2187 1:N:0:
+ATATAAAAATAATCAAACTACATCGACAAAATGTCAATATCATGCAGCTGCTTCAAAACCAAAATGATGATTTTTTGAGAAGTGATTATTTAAATGTCGT
++
+CCCFFFFFHHHHHJJJJJJJJJJJJJJJJJIJJIJJJJJJJJJJJJJJJJJJJJJJJJJJIJIJJJJJJJJJJHHFFDDDEDCDDFEEDFEEEDEEFEDD