Mercurial > repos > gbcs-embl-heidelberg > je_markdupes

diff test-data/illu_file_2_sequence.txt @ 0:d39a96961423 draft

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Initial upload
author gbcs-embl-heidelberg
date Wed, 25 Nov 2015 12:36:12 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/illu_file_2_sequence.txt	Wed Nov 25 12:36:12 2015 -0500
@@ -0,0 +1,100 @@
+@D3FCO8P1:229:C49NHACXX:8:1101:1347:2097 4:N:0:
+NNNNNGAGAATGGTGNNNNTGTNNNNNTCCTAATATTCCATTTATGCTATATCCAGTCGTTCTNNNNNNNNNNNNNNNNNNNNNNNNNGTGGTTTCATNN
++
+#####22@>@@@@@@####43@#####11=?????????>?????????????????????@?#####################################
+@D3FCO8P1:229:C49NHACXX:8:1101:1406:2140 4:N:0:
+NNNNNATTATATGAAAGNAATATAAAATTTATATATAAATTTGGAAGAATTATCATGTGCGCTCNNNNNNNNNTTANANATNNNNNNAGAGTTATATGAN
++
+#####22@@@@@@@?@@#3=>?@@?@@@?@?@>?????>????????????>??????@?????####################################
+@D3FCO8P1:229:C49NHACXX:8:1101:1418:2170 4:N:0:
+NTATTAGCTATTGGATTATTAGGATTTATTGTATGAGCTCATCATATATTTACCGTTGGAATAGATNTAGATACTCGAGCTTATTTTACCTCAGCTACTA
++
+#4=DFFFFHHHHHJEHIHHJIJJHIJJIJJJIJJJIJJJJIJJJJIJIIJIGJJJJJJJJJJJJJJ#-;CFHIJJJHHHFFFFFEEEEEEEDDDDDDDDD
+@D3FCO8P1:229:C49NHACXX:8:1101:1385:2179 4:N:0:
+CTTCTCAGAGATCTGCATCTAATCTAGCTGCTCCCATGCTACCCCTGAATACCCTACACGGCCTGAACAGTCGCCCCACAAGTCTGGCGTGGGGCTGTCT
++
+@@CDFFDFHF?HHGBHHIJJIGIIIJGIJBEHIGID<9EHIIJJI@;?BGGHIIIIIIIIIIIAGE@HHH?EDFDDB?B?9?:ACCC(85>>B>>@BBD@
+@D3FCO8P1:229:C49NHACXX:8:1101:1452:2184 4:N:0:
+CTTTTCCATTCTGTATGCCCTTCCCTCTCGCACACTCGACCCAATGACCCGCTTTGCTCTGTTTACCTCTCCGCTCTGTTTTTGCACTTGGAAATTGCTA
++
+B@CFFFFFHGDHHGGIJJIJJJGHIIIGFHHIIGIIIJIJJEHGEGGIJJIIIIGGGHGGFHHFEC@BCEDECDDDDDDDDDD?AC>ACCCCACADCCDD
+@D3FCO8P1:229:C49NHACXX:8:1101:1370:2193 4:N:0:
+GCTGTTTGAAAGCAAGGAGCGCAAGAAATCGTATGCCCATGTTGACCAGTTTGAATATGAGATAATCGTGCAAACACTCCCAAGGAACTGTCTCTTATAC
++
+CCCFFFFFHHHHHJJJJJJJJJJJJJJJJJJJJJJJJJIJJJJJHJJJJJGHIIIIIJJIJIJEEEEHHFFFEEEEDED3=CDDDDDDDDCDDDDDDDDD
+@D3FCO8P1:229:C49NHACXX:8:1101:1486:2204 4:N:0:
+TTAATATTCTTCGACTTCCAAGACGTTCATAAGATACATTAGCTAAACAAAATAACCCAGAAGAACATAAACCATGAGCAATTATTAATGTATAAGAACC
++
+CCCFFFFFHHHFHIJJJJJJJJJJIIGIIIJJIIGHJJJJIJJIIJIJJJIJJIJJJJJJJJIGIJIIJJHHFHHFFFFFEDEEEFFFEDDDEFEDDDDD
+@D3FCO8P1:229:C49NHACXX:8:1101:1460:2207 4:N:0:
+CATTATTATATTTATTGGAGTTAATTTAACATTTTTTCCTCAACATTTTTTAGGATTGGCTGGAATACCTCGACGTTATTCAGATTACCCAGATGCTTAC
++
+@?@DDDFDHDHHHIJJJJEHHHIIIIJIJHIHIJJJJIGHEIIIJJIJJJHHGIIIJIJIJIJEHGHGFHFH8?ABC?BC>>AADDCACDDDDD<@CD>>
+@D3FCO8P1:229:C49NHACXX:8:1101:1339:2211 4:N:0:
+CNATTGGGCATAGCCATCGAGGTGTGTCCGGTGTCAAATCAAGTGCTGCAACTGGGCGTGGACTATCGGAATCATCCGGCGGCACTGCTGTTGGCCGCCA
++
+C#1ADDFFHHHHGJJJJJJIJJAGHHGIHHIDFGHIJJJGIJJGIJJIIJIJJIJJJJHHFEFEECACDDBB@CCD@?BDDDDDDDDDDDDCDB:@>BBD
+@D3FCO8P1:229:C49NHACXX:8:1101:1402:2222 4:N:0:
+GTCCATGACCATTAACAGGAGCTATCGGAGCTATAACAACTGTATCAGGTATAGTAAAATGATTTCATCAATATGATATTTCATTATTTGTATTAGGTAA
++
+@BCFFFFFHHFHGJJJJJJIIJJGJIIJGHGHIIIJIJJIGIHIIGIIJBFDIIGHJJIJJGIEIEGHIJCH@EHFHGHHHGFFFFFFFFFDDEEDCAC@
+@D3FCO8P1:229:C49NHACXX:8:1101:1388:2233 4:N:0:
+GAAATAAACCAAGATACCTTGTGTTTCTTGGCAAGAAAGCAAAACATTGATGCAATTATTGGTATAATAACTTGTAAGATTGGTAATTGCATTAAATTGT
++
+@@<DDAD4DB?:3E3+2AEAHHFIIIIIIIE9?9?3DGFF>;;F;D9BD9?@DCFFICFGF@FCF@@F@C@DF<7C@E3?ECC>7@DDBAADA;;;>A:A
+@D3FCO8P1:229:C49NHACXX:8:1101:1497:2240 4:N:0:
+CATATGCAGCAATCGCAGCAACAACTAAATGGAAACCAACAGCATCTGCCCATCAATCGTCAACCGGCGCCACAGCAATCACACTTCCTGGACAATTCAA
++
+@@?DFFFDHDHHHIGJIJJJJJJJIJJIJJJJJIJJJIIJJJJJJIIJJJHHGGGEGIJEHIJGHFFDDDDD@BBDCDDDDDDDDDDDDDDBDDBDDDDE
+@D3FCO8P1:229:C49NHACXX:8:1101:1399:2245 4:N:0:
+AATTTCTTTATTAAATAGAATTGTTTCTTGATCTTGAATTTCTATAATTTTATTATCTTTTTTATCTTTTTTTAGAGCTGCTTATACTTTATATTTATAT
++
+?@@DFBEDHFHHGJIIHIEEHIIIIJIJJJ?FFHGHFGHIJHGGIGDFFIG9EHGHEHIJJJJGIFHIGIJJA=;?>CEBBEECCC;>CDCA;BDD>@;C
+@D3FCO8P1:229:C49NHACXX:8:1101:1664:2088 4:N:0:
+NNNNNATAATTTGTTNNNNNNNNNNNNTTCACAATTTGGTCAATAGCTTGCATAGAAAAATTANNNNNNNNNNNNNNNNNNNNNNNNNNTAATCCAGCNN
++
+#####42@>@@@@@@############11=???????????????????????>????@@@@@#####################################
+@D3FCO8P1:229:C49NHACXX:8:1101:1512:2095 4:N:0:
+NNNNNGTTCTATCAGNNNNTTTNNNNNTAACTTATTGAGGTTTATGTGGTTCTTATACATTAANNNNNNNNNNNNNNNNNNNNNNNNNTGGGTTATTTNN
++
+#####42@@@?@@@@####43@#####11=???????8??>??>??????????????@@@@@#####################################
+@D3FCO8P1:229:C49NHACXX:8:1101:1630:2114 4:N:0:
+NNNNNAAAGTTGGCANNNNATATNNNCGAAGATAATACACGTACACGTCATCCGCGATTTAGAANNNNNNNNNNNNNNNNNNNNNNNNCGCCAAGGTGNN
++
+#####22@@@@@@@?####33@@###14=???????????????????????????????????####################################
+@D3FCO8P1:229:C49NHACXX:8:1101:1540:2119 4:N:0:
+NNNNNGCACACCAATNNNATTATNATGTTATTTAATACATTTATTAAAGAGAATAATGAAATTTNNNNNNNNNANNNNNNNNNNNNNNTATATTCTGCNN
++
+#####22@@@@@@@?###34@@@#1@????????????????????????????????@@@@@@####################################
+@D3FCO8P1:229:C49NHACXX:8:1101:1503:2124 4:N:0:
+NNNNNTAAGAGAGTANNNATAAGATACTCCAAGCAAAAGCAGAGTATCTGTAAACACTTCGCTCNNNNNNNNNGNNNNNNNNNNNNNCCGTGCAAGTCNN
++
+#####22@??@?@??###44@@@@?@?@@@????????????>?<?????????????@@???@####################################
+@D3FCO8P1:229:C49NHACXX:8:1101:1671:2150 4:N:0:
+NNNGNCAAGACAGTGACAATTCAAATTACACATGCGCGTTGCGCACTCACAGATACAAAGATACANNNANNNNCGGGCATACNTNNNAACAGAGCGACTG
++
+###2#4<@@@@@??@@@@?@@@@@@@@@@@@@@@???????????????????????????????###################################
+@D3FCO8P1:229:C49NHACXX:8:1101:1552:2151 4:N:0:
+NNNGNGACATACTCAATATGTTTTACATATTTATGACAGACCTTCTCAAACAGAATATTTTACATNNNTTNNNCATTACCGTTTNNNCACAACACATTTT
++
+###2#2:@?@?@@@?????@@@@@@?@??@@@???@@?????????????????????@@@@@@@###-8###--=?????==?################
+@D3FCO8P1:229:C49NHACXX:8:1101:1700:2159 4:N:0:
+NNNCNCGGCATACCTGCTGCCATTGGTCACACTGGCAGATTACGCGATTATTTTTTTTACGGAAANNNTGNNNTTTCCCTTCCGGNNTGAATTGCCTGGA
++
+###2#2:@@?@@@@@@@@@?@?@??@??@@@@??????<????????<?????????=<?########################################
+@D3FCO8P1:229:C49NHACXX:8:1101:1652:2170 4:N:0:
+NATAAAGACCTACTAAACCTAACAATTCCAGCTATATTAACATTAGCTGAAGACACTAATCAGGAANAATTTAAAACAGAAAACATAATGGCACAGTCCA
++
+#4=AAAAACCCCCCBCCCBBB7CCCCCCBCCBBAABBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB#.;AAABBAAAAA@AA@@@@@@B>==?AA????A
+@D3FCO8P1:229:C49NHACXX:8:1101:1537:2174 4:N:0:
+NCGTGGAAGTCTTTGCGCAGACGGATCACCTCCTCGTTTGCAAGTGTGATAGGTACATCATGCTTTNTGTTCAAATCTTGGAAAATGAAATGTGCATGTA
++
+#+1=BBBB?FCBFG4?@@1<?A:6EF:?9)?00??:BDD1<B##########################################################
+@D3FCO8P1:229:C49NHACXX:8:1101:1563:2176 4:N:0:
+GATATAGACCGTTAGTCGGCGGGCGGTACCTGGTACCAGCGGGCGGCAAAAAAATAATGTGGGGAGGGGTCGGCGAAGTGTCGCTGAAAACGCCCCTTGC
++
+???DDDDDDD:@AE@AED@E?###############################################################################
+@D3FCO8P1:229:C49NHACXX:8:1101:1587:2187 4:N:0:
+ATTTATGGATCAACATTTTTTATAGCAACAGGATTTCACGGAATTCATGTATTAATCGGAACAACTTTTTTATTAGTATGTTTACTACGACATTTAAATA
++
+BBCFFFFFHHHHHJJJJJJJJJJJJJJJJJJJIJJJJJJJJIJJJJJJJIHGIGIIJJJIJJJJHHHHHHDDEEEEDEFEFEEDDDEDDDDDDDEEEDEE