view gmql_rest.yaml @ 0:35d52820e7c7 draft default tip

planemo upload for repository https://github.com/lu-brn/gmql-galaxy commit 953ee36ceda5814dc9baa03427bc0eb4ee2e93bd-dirty

---
GMQL_URL :
    http://genomic.elet.polimi.it/gmql-rest #server to use
access:
    prefix: ''
    operations:
        user: [user]
        guest: [guest]
        register: [register]
        login: [login]
        logout: [logout]
metadata:
    prefix: 'metadata'
    operations:
        list: ['{datasetName}', filter]
repository: 
    prefix: datasets
    operations:
        list_datasets : []
        list_samples : ['{datasetName}']
        delete_dataset : ['{datasetName}']
        rename_dataset : ['{datasetName}', rename, '{newDatasetName}']
        download_zip : ['{datasetName}', zip]
        download_sample : ['{datasetName}','{sample}',region]
        download_meta : ['{datasetName}','{sample}',metadata]
        upload_url : ['{datasetName}',uploadSampleUrls]
        upload_data : ['{datasetName}',uploadSample]
        schema : ['{datasetName}',schema]
    params:
        upload_url: schemaName
        upload_data: schemaName
query_exec: 
    prefix: queries
    operations:
        compile: [compile]
        run: [run,'{name}','{output}']
query_monitor : 
    prefix: jobs
    operations:
        jobs: []
        log: ['{jobid}',log]
        stop: ['{jobid}',stop]
        status: ['{jobid}',trace]