annotate gmql_operators_order.xml @ 0:a80c93182db3 draft default tip

planemo upload for repository https://github.com/lu-brn/gmql-galaxy commit 953ee36ceda5814dc9baa03427bc0eb4ee2e93bd-dirty

<macro>
    <import>gmql_queries_macros.xml</import>
    <xml name="order">
        <expand macro="input_var" name="input_var_ordering_ds" label="Input Dataset to Order" />
        <expand macro="output_var" />
        <section name="ordering_attributes" title="Ordering Attributes" expanded="true"
                 help="Samples or samples regions will be ordered according to the values of the given attribute(s).
                       A a new ordering metadata and/or region attribute is added with the sample or region ordering
                       value, respectively. " >
            <repeat name="attributes" title="Add new ordering attribute" min="1" default="1"
                    help="At least an ordering metadata or region attribute must be specified.">
                <param name="att_type" type="select" display="radio" label="Metadata or region attribute?" >
                    <option value="metadata">Metadata</option>
                    <option value="region">Region</option>
                </param>
                <param name="attribute_name" type="text" label="Attribute Name" >
                    <expand macro="text_val" />
                </param>
                <param name="order_type" label="Ascending or Descending order?" type="select" display="radio" >
                    <option value="asc">Ascending</option>
                    <option value="desc">Descending</option>
                </param>
            </repeat>
        </section>
        <section name="top_options" title="Samples/Regions to keep" expanded="true"
                 help="It is possible to specify the number (or percentage) of samples (or regions) to be extracted
                 from the ordered dataset (or from each sample), starting from the top (with respect to the
                 ascending/descending ordering)." >
            <repeat name="to" title="Constraint on number of samples (sample region)"
                    min="0" default="0" >
            <param name="type" type="select" label="Constraint on samples or samples regions?">
                    <option value="metadata">Samples</option>
                    <option value="region">Samples Regions</option>
            </param>
            <conditional name="opt">
                <param name="k_type" type="select" label="How to chose samples/sample regions" display="radio" >
                    <option value="n">Top k elements</option>
                    <option value="perc">Top k % elements</option>
                    <option value="group">Top k elements of each group (implicitly consider the ordering defined by
                        first grouping identical values of the first n − 1 ordering attributes, and then sorted by the
                        remaining attributes)</option>
                </param>
                <when value="n">
                    <param name="k" type="integer" label="Value of k" value="1" min="1"/>
                </when>
                <when value="group">
                    <param name="k" type="integer" label="Value of k" value="1" min="1"/>
                </when>
                <when value="perc">
                    <param name="k" type="integer" label="Value of k" value="1" min="1" max="100"/>
                </when>
            </conditional>
            </repeat>
        </section>
        <expand macro="materialize_stm" />
    </xml>
</macro>