Mercurial > repos > geco-team > gmql_queries_composer
diff gmql_queries_macros.xml @ 0:a80c93182db3 draft default tip
planemo upload for repository https://github.com/lu-brn/gmql-galaxy commit 953ee36ceda5814dc9baa03427bc0eb4ee2e93bd-dirty
| author | geco-team |
|---|---|
| date | Tue, 26 Jun 2018 09:08:06 -0400 |
| parents | |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/gmql_queries_macros.xml Tue Jun 26 09:08:06 2018 -0400 @@ -0,0 +1,76 @@ +<macros> + <xml name="input_ds" token_label="@LABEL@"> + <param name="input_ds" type="select" label="@LABEL@"> + <options from_dataset="gmql_datasets"> + <column name="value" index="0"/> + </options> + </param> + </xml> + <xml name="output_var"> + <param name="output_var" type="text" label="Output Variable Name" > + <expand macro="text_val" /> + </param> + </xml> + <xml name="input_var" token_name="@NAME@" token_label="@LABEL@" token_optional="@OPTIONAL@"> + <param name="@NAME@" label="@LABEL@" optional="@OPTIONAL@" type="text" + help="Must be a dataset variable already defined as output of a previous operation."> + <expand macro="text_val" /> + </param> + </xml> + <xml name="materialize_stm" > + <conditional name="m_stm"> + <param name="materialize_stm" type="boolean" label="Materialize the result?" help="This may be helpful to check intermediate datasets" /> + <when value="true"> + <param name="file_name" type="text" label="Name of the file into which the dataset DS will be saved" + help="The actual GMQL implementation materializes DS into a file with a name in the form [queryname]_[timestamp]_filename"> + <validator type="regex" message="Only alphanumeric characters and underscore allowed.">[\w]+$</validator> + </param> + </when> + </conditional> + </xml> + <xml name="block_logCon" > + <section name="block_logCon" title="Logical concatenation between blocks" expanded="true" + help="The following logical connectors applies to the WHOLE following block."> + <expand macro="logCon" /> + <param name="negate" type="boolean" label="Negative Condition" /> + </section> + </xml> + <xml name="logCon"> + <param name="logCon" type="select" label="Logical Operator"> + <option value="AND">AND</option> + <option value="OR">OR</option> + </param> + </xml> + <xml name="metajoin_attribute" token_name="@NAME@" token_optional="@OPTIONAL@"> + <param name="@NAME@" type="text" label="Attribute Name" optional="@OPTIONAL@"> + <validator type="regex" message="Invalid attribute name.">[\w]+(.[\w]+)?$</validator> + <option value="attribute_name">attribute_name</option> + <option value="DS.attribute_name">DS.attribute_name</option> + <option value="DS.attribute_name">Prefix.DS.attribute_name</option> + </param> + <yield /> + </xml> + <xml name="metajoin_options"> + <param type="select" label="Matching Options" name="metajoin_match"> + <option value="SIMPLE">Match all attributes that are equal to OR end with the dot-separated suffix specified name</option> + <option value="EXACT">Match all attributes that are equal to the specified name (without any prefixes)</option> + <option value="FULL">Match two attributes if they end with the specified name AND their full names are equal</option> + </param> + </xml> + <xml name="aggrFuncs" token_help="@HELP@" token_optional="@OPTIONAL@" token_label="@LABEL@"> + <param name="function" type="select" label="@LABEL@" optional="@OPTIONAL@" + help="@HELP@"> + <option value="SUM">Sum Values</option> + <option value="AVG">Average Value</option> + <option value="MIN">Minimum Value</option> + <option value="MAX">Maximum Value</option> + <option value="STD">Standard Deviation</option> + <option value="BAG">Create comma separated string of attributes values</option> + <option value="BAGD">Create comma separated list of distinct attributes values</option> + <yield /> + </param> + </xml> + <xml name="text_val"> + <validator type="regex" message="Only alphanumeric characters and underscore allowed.">[\w]+$</validator> + </xml> +</macros> \ No newline at end of file