Mercurial > repos > geco-team > gmql_queries_composer
diff gmql_operators_tests.xml @ 0:a80c93182db3 draft default tip
planemo upload for repository https://github.com/lu-brn/gmql-galaxy commit 953ee36ceda5814dc9baa03427bc0eb4ee2e93bd-dirty
| author | geco-team |
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| date | Tue, 26 Jun 2018 09:08:06 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/gmql_operators_tests.xml Tue Jun 26 09:08:06 2018 -0400 @@ -0,0 +1,796 @@ +<macros> + <xml name="query_intro" token_name="@NAME@"> + <param name="authToken" value="guest2.gmql_user"/> + <param name="query_name" value="@NAME@"/> + <conditional name="query_create"> + <param name="create" value="yes"/> + </conditional> + </xml> + <xml name="query_end" token_mat="@MAT@"> + <conditional name="materialize"> + <param name="materialize_result" value="@MAT@"/> + <yield /> + </conditional> + </xml> + <xml name="simple_select" token_ds="@DS@"> + <repeat name="operations"> + <conditional name="operation"> + <param name="operator" value="SELECT"/> + <conditional name="input"> + <param name="input_type" value="i_ds"/> + <param name="gmql_datasets" value="rep.gmql_repository"/> + <param name="input_ds" value="@DS@"/> + <section name="region_predicates"> + <conditional name="conditions"> + <param name="ad_flags" value="strings"/> + <param name="conditions_string" value=""/> + </conditional> + </section> + <section name="metadata_predicates"> + <conditional name="conditions"> + <param name="ad_flags" value="strings"/> + <param name="conditions_string" value=""/> + </conditional> + </section> + <section name="semijoin_predicate"> + <param name="condition" value="IN"/> + <param name="ds_ext" value=""/> + </section> + </conditional> + <yield /> + </conditional> + </repeat> + </xml> + <xml name="composer_tests"> + <tests> + <test> + <!-- TEST 1: Select (Simple Metadata Condition) --> + <expand macro="query_intro" name="test_select1"/> + <repeat name="operations"> + <conditional name="operation" > + <param name="operator" value="SELECT"/> + <conditional name="input"> + <param name="input_type" value="i_ds"/> + <param name="gmql_datasets" value="rep.gmql_repository"/> + <param name="input_ds" value="Example_Dataset_1"/> + <section name="metadata_predicates"> + <conditional name="conditions"> + <param name="ad_flags" value="steps"/> + <param name="negate" value="false"/> + <param name="attribute" value="grant"/> + <param name="condition" value="eq"/> + <param name="value" value="Stam"/> + </conditional> + </section> + <section name="region_predicates"> + <conditional name="conditions"> + <param name="ad_flags" value="strings"/> + <param name="conditions_string" value=""/> + </conditional> + </section> + <section name="semijoin_predicate"> + <param name="condition" value="IN"/> + <param name="ds_ext" value=""/> + </section> + </conditional> + </conditional> + </repeat> + <param name="output_var" value="OUT"/> + <conditional name="m_stm"> + <param name="materialize_stm" value="false" /> + </conditional> + <expand macro="query_end" mat="false"/> + <output name="query" file="select1.gmql_query"/> + </test> + <test> + <!-- TEST 2: Select (Multiple Metadata, Region condition) --> + <expand macro="query_intro" name="test_select2"/> + <repeat name="operations"> + <conditional name="operation" > + <param name="operator" value="SELECT"/> + <conditional name="input"> + <param name="input_type" value="i_ds"/> + <param name="gmql_datasets" value="rep.gmql_repository"/> + <param name="input_ds" value="Example_Dataset_1" /> + <section name="region_predicates"> + <conditional name="conditions"> + <param name="is_meta_value" value="false" /> + <param name="ad_flag" value="steps" /> + <param name="attribute" value="score" /> + <param name="value" value="3" /> + <param name="negate" value="false" /> + <param name="condition" value="gt" /> + </conditional> + </section> + <section name="metadata_predicates" > + <conditional name="conditions" > + <param name="ad_flag" value="steps" /> + <param name="attribute" value="patient_age" /> + <param name="value" value="64" /> + <param name="negate" value="false" /> + <param name="condition" value="eq" /> + <repeat name="pm_additional" > + <param name="negate" value="false" /> + <param name="attribute" value="cell" /> + <param name="logCon" value="AND" /> + <param name="value" value="8988T" /> + <param name="condition" value="eq" /> + </repeat> + </conditional> + </section> + <section name="semijoin_predicate"> + <param name="condition" value="IN"/> + <param name="ds_ext" value=""/> + </section> + </conditional> + </conditional> + </repeat> + <param name="output_var" value="OUT"/> + <conditional name="m_stm"> + <param name="materialize_stm" value="false" /> + </conditional> + <expand macro="query_end" mat="false"/> + <output name="query" file="select2.gmql_query"/> + </test> + <test> + <!-- TEST 3: Select (TEST2 + Semijoin predicate) --> + <expand macro="query_intro" name="test_select3"/> + <repeat name="operations"> + <conditional name="operation" > + <param name="operator" value="SELECT"/> + <conditional name="input"> + <param name="input_type" value="i_ds"/> + <param name="gmql_datasets" value="rep.gmql_repository"/> + <param name="input_ds" value="Example_Dataset_1" /> + <section name="region_predicates"> + <conditional name="conditions"> + <param name="is_meta_value" value="false" /> + <param name="ad_flag" value="steps" /> + <param name="attribute" value="score" /> + <param name="value" value="3" /> + <param name="negate" value="false" /> + <param name="condition" value="gt" /> + </conditional> + </section> + <section name="metadata_predicates" > + <conditional name="conditions" > + <param name="ad_flag" value="steps" /> + <param name="attribute" value="patient_age" /> + <param name="value" value="64" /> + <param name="negate" value="false" /> + <param name="condition" value="eq" /> + <repeat name="pm_additional" > + <param name="negate" value="false" /> + <param name="attribute" value="cell" /> + <param name="logCon" value="AND" /> + <param name="value" value="8988T" /> + <param name="condition" value="eq" /> + </repeat> + </conditional> + </section> + <section name="semijoin_predicate"> + <param name="condition" value="IN"/> + <param name="ds_ext" value=""/> + </section> + </conditional> + </conditional> + </repeat> + <param name="output_var" value="OUT"/> + <conditional name="m_stm"> + <param name="materialize_stm" value="false" /> + </conditional> + <repeat name="operations"> + <conditional name="operation"> + <param name="operator" value="SELECT" /> + <conditional name="input"> + <param name="input_type" value="i_ds"/> + <param name="gmql_datasets" value="rep.gmql_repository"/> + <param name="input_ds" value="Example_Dataset_2" /> + <section name="region_predicates"> + <conditional name="conditions"> + <param name="ad_flags" value="strings"/> + <param name="conditions_string" value=""/> + </conditional> + </section> + <section name="metadata_predicates"> + <conditional name="conditions"> + <param name="ad_flags" value="strings"/> + <param name="conditions_string" value=""/> + </conditional> + </section> + <section name="semijoin_predicate"> + <repeat name="sj_attributes" > + <param name="sj_att" value="cell" /> + </repeat> + <param name="ds_ext" value="OUT" /> + </section> + </conditional> + <param name="output_var" value="OUT2"/> + </conditional> + </repeat> + <expand macro="query_end" mat="false"/> + <output name="query" file="select3.gmql_query"/> + </test> + <test> + <!-- TEST 4: PROJECT --> + <expand macro="query_intro" name="test_project1"/> + <expand macro="simple_select" ds="Example_Dataset_1" /> + <param name="output_var" value="OUT"/> + <conditional name="m_stm"> + <param name="materialize_stm" value="false" /> + </conditional> + <repeat name="operations"> + <conditional name="operation"> + <param name="operator" value="PROJECT"/> + <param name="input_var" value="OUT"/> + <section name="region_att"> + <conditional name="allbut"> + <param name="allbut_flag" value="exclude"/> + <repeat name="list_exclude"> + <param name="attribute" value="name"/> + </repeat> + <repeat name="list_exclude"> + <param name="attribute" value="frame"/> + </repeat> + </conditional> + </section> + <section name="meta_att"> + <conditional name="allbut"> + <param name="allbut_flag" value="keep"/> + <repeat name="list_keep"> + <param name="attribute" value="cell"/> + </repeat> + </conditional> + </section> + <section name="project_new_meta"/> + <section name="project_new_regions"> + <repeat name="new_region_att"> + <param name="new_name" value="lengh"/> + <conditional name="gen_function"> + <param name="expression" value="stop - start"/> + <param name="gen_type" value="arithmetic"/> + </conditional> + </repeat> + </section> + <param name="output_var" value="OUT2"/> + </conditional> + </repeat> + <output name="query" file="project1.gmql_query"/> + </test> + <test> + <!-- TEST 5: EXTEND --> + <expand macro="query_intro" name="test_extend1"/> + <expand macro="simple_select" ds="Example_Dataset_1"/> + <param name="output_var" value="OUT"/> + <conditional name="m_stm"> + <param name="materialize_stm" value="false"/> + </conditional> + <repeat name="operations"> + <conditional name="operation"> + <param name="operator" value="EXTEND"/> + <section name="new_metadata_attributes"> + <repeat name="new_attributes"> + <param name="new_name" value="avg_score"/> + <param name="function" value="AVG"/> + <param name="argument" value="score"/> + </repeat> + <repeat name="new_attributes"> + <param name="new_name" value="max_p"/> + <param name="function" value="MAX"/> + <param name="argument" value="pvalue"/> + </repeat> + </section> + <param name="input_var" value="OUT" /> + <param name="output_var" value="OUT2"/> + </conditional> + </repeat> + <output name="query" file="extend1.gmql_query" /> + </test> + <test> + <!-- TEST 6: ORDER --> + <expand macro="query_intro" name="test_order1" /> + <expand macro="simple_select" ds="Example_Dataset_1" /> + <param name="output_var" value="OUT" /> + <repeat name="operations"> + <conditional name="operation"> + <param name="operator" value="ORDER"/> + <param name="output_var" value="OUT2"/> + <param name="input_var_ordering_ds" value="OUT"/> + <section name="ordering_attributes"> + <repeat name="attributes"> + <param name="attribute_name" value="score"/> + <param name="att_type" value="region"/> + <param name="order_type" value="desc"/> + </repeat> + <repeat name="attributes"> + <param name="attribute_name" value="start"/> + <param name="att_type" value="region"/> + <param name="order_type" value="asc"/> + </repeat> + <repeat name="attributes"> + <param name="attribute_name" value="ID"/> + <param name="att_type" value="metadata"/> + <param name="order_type" value="asc"/> + </repeat> + </section> + <section name="top_options"> + <repeat name="to"> + <param name="type" value="metadata"/> + <conditional name="opt"> + <param name="k_type" value="n"/> + <param name="k" value="5"/> + </conditional> + </repeat> + </section> + </conditional> + </repeat> + <output name="query" file="order1.gmql_query" /> + </test> + <test> + <!-- TEST 7: GROUP --> + <expand macro="query_intro" name="test_group1"/> + <expand macro="simple_select" ds="Example_Dataset_1"/> + <param name="output_var" value="OUT"/> + <repeat name="operations"> + <conditional name="operation"> + <param name="operator" value="GROUP"/> + <param name="output_var" value="OUT2"/> + <param name="input_var" value="OUT"/> + <conditional name="add_grouping"> + <param name="group_type" value="both"/> + <section name="regions"> + <repeat name="group_regions_atts"> + <param name="attribute" value="score"/> + </repeat> + <repeat name="new_attributes"> + <param name="new_name" value="min_signal"/> + <param name="function" value="MIN"/> + <param name="argument" value="signal"/> + </repeat> + </section> + <section name="metadata"> + <conditional name="meta_agg"> + <param name="meta_agg_flag" value="true"/> + <repeat name="new_attributes"> + <param name="new_name" value="min_tier"/> + <param name="function" value="MIN"/> + <param name="argument" value="cell_tier"/> + </repeat> + </conditional> + <repeat name="group_meta_atts"> + <param name="metajoin_match" value="SIMPLE"/> + <param name="j_att" value="cell_tissue"/> + </repeat> + </section> + </conditional> + </conditional> + </repeat> + <output name="query" file="group1.gmql_query" /> + </test> + <test> + <!-- TEST 8: MERGE --> + <expand macro="query_intro" name="test_merge1"/> + <expand macro="simple_select" ds="Example_Dataset_1"/> + <param name="output_var" value="OUT"/> + <repeat name="operations"> + <conditional name="operation"> + <param name="operator" value="MERGE"/> + <param name="output_var" value="OUT2"/> + <param name="input_var" value="OUT"/> + <section name="groupby"> + <repeat name="group_meta_atts"> + <param name="metajoin_match" value="EXACT"/> + <param name="j_att" value="antibody_target"/> + </repeat> + </section> + </conditional> + </repeat> + </test> + <test> + <!-- TEST 9: UNION --> + <expand macro="query_intro" name="test_merge1"/> + <expand macro="simple_select" ds="Example_Dataset_1"/> + <param name="output_var" value="IN"/> + <expand macro="simple_select" ds="Example_Dataset_2" > + <param name="output_var" value="IN2" /> + </expand> + <repeat name="operations"> + <conditional name="operation" > + <param name="operator" value="UNION" /> + <param name="output_var" value="OUT" /> + <param name="input_var_second" value="IN2" /> + <param name="input_var_first" value="IN" /> + </conditional> + </repeat> + <output name="query" file="union1.gmql_query" /> + </test> + <test> + <!-- TEST 10: DIFFERENCE --> + <expand macro="query_intro" name="test_merge1"/> + <expand macro="simple_select" ds="Example_Dataset_1"/> + <param name="output_var" value="IN"/> + <expand macro="simple_select" ds="Example_Dataset_2"> + <param name="output_var" value="IN2"/> + </expand> + <repeat name="operations"> + <conditional name="operation"> + <param name="operator" value="DIFFERENCE"/> + <param name="output_var" value="OUT"/> + <param name="input_var_negative" value="IN2"/> + <param name="input_var_reference" value="IN"/> + <param name="exact_flag" value="true"/> + <section name="joinby"> + <repeat name="group_meta_atts"> + <param name="metajoin_match" value="SIMPLE"/> + <param name="j_att" value="cell"/> + </repeat> + </section> + </conditional> + </repeat> + <output name="query" file="difference1.gmql_query"/> + </test> + <test> + <!-- TEST 11: JOIN (Genomic Predicate + Joinby condition) --> + <expand macro="query_intro" name="test_join1"/> + <expand macro="simple_select" ds="Example_Dataset_1"/> + <param name="output_var" value="IN"/> + <expand macro="simple_select" ds="Example_Dataset_2"> + <param name="output_var" value="IN2"/> + </expand> + <repeat name="operations"> + <conditional name="operation"> + <param name="operator" value="JOIN"/> + <param name="output_var" value="OUT"/> + <param name="input_var_anchor" value="IN"/> + <param name="input_var_experiment" value="IN2"/> + <section name="conditions_section"> + <conditional name="conditions"> + <param name="c_type" value="distance"/> + <repeat name="distance_conditions"> + <conditional name="type_dc"> + <param name="type_dc_value" value="dist"/> + <param name="dc" value="MD"/> + <param name="n" value="1"/> + </conditional> + </repeat> + <repeat name="distance_conditions"> + <conditional name="type_dc"> + <param name="type_dc_value" value="stream"/> + <param name="ds" value="UP"/> + </conditional> + </repeat> + <param name="output_opt" value="RIGHT"/> + </conditional> + </section> + <section name="joinby"> + <repeat name="joinby_clause"> + <param name="metajoin_match" value="SIMPLE"/> + <param name="j_att" value="cell"/> + </repeat> + </section> + </conditional> + </repeat> + <output name="query" file="join1.gmql_query"/> + </test> + <test> + <!-- TEST 12: JOIN (Genomic Predicate, Region Conditions, Joinby) --> + <expand macro="query_intro" name="test_join2"/> + <expand macro="simple_select" ds="Example_Dataset_1"/> + <param name="output_var" value="IN"/> + <expand macro="simple_select" ds="Example_Dataset_2"> + <param name="output_var" value="IN2"/> + </expand> + <repeat name="operations"> + <conditional name="operation"> + <param name="operator" value="JOIN"/> + <param name="input_var_anchor" value="IN"/> + <param name="output_var" value="OUT"/> + <param name="input_var_experiment" value="IN2"/> + <section name="conditions_section"> + <conditional name="conditions"> + <param name="c_type" value="both"/> + <repeat name="distance_conditions"> + <conditional name="type_dc"> + <param name="type_dc_value" value="dist"/> + <param name="dc" value="DL"/> + <param name="n" value="0"/> + </conditional> + </repeat> + <param name="output_opt" value="INT"/> + <repeat name="region_attributes"> + <param name="attribute" value="score" /> + </repeat> + <repeat name="region_attributes"> + <param name="attribute" value="chr" /> + </repeat> + </conditional> + </section> + <section name="joinby"> + <repeat name="joinby_clause"> + <param name="metajoin_match" value="SIMPLE"/> + <param name="j_att" value="cell"/> + </repeat> + <repeat name="joinby_clause"> + <param name="metajoin_match" value="SIMPLE"/> + <param name="j_att" value="provider"/> + </repeat> + </section> + </conditional> + </repeat> + <output name="query" file="join2.gmql_query"/> + </test> + <test> + <!-- TEST 13: MAP --> + <expand macro="query_intro" name="test_map1"/> + <expand macro="simple_select" ds="Example_Dataset_1"/> + <param name="output_var" value="IN"/> + <expand macro="simple_select" ds="Example_Dataset_2"> + <param name="output_var" value="IN2"/> + </expand> + <repeat name="operations"> + <conditional name="operation"> + <param name="input_var_reference" value="IN"/> + <param name="output_var" value="OUT"/> + <param name="count_result" value="mapped_n"/> + <param name="input_var_experiment" value="IN2"/> + <param name="operator" value="MAP"/> + <section name="new_regions_attributes"> + <repeat name="new_regions"> + <param name="new_name" value="avg_score"/> + <param name="function" value="AVG"/> + <param name="argument" value="score"/> + </repeat> + <repeat name="new_regions"> + <param name="new_name" value="min_score"/> + <param name="function" value="MIN"/> + <param name="argument" value="score"/> + </repeat> + <repeat name="new_regions"> + <param name="new_name" value="chr_list"/> + <param name="function" value="BAG"/> + <param name="argument" value="chr"/> + </repeat> + </section> + <section name="joinby"> + <repeat name="joinby_clause"> + <param name="metajoin_match" value="SIMPLE"/> + <param name="j_att" value="cell_tissue"/> + </repeat> + </section> + </conditional> + </repeat> + <output name="query" file="map1.gmql_query"/> + </test> + <test> + <!-- TEST 13: COVER (Base Variant) --> + <expand macro="query_intro" name="test_cover1"/> + <expand macro="simple_select" ds="Example_Dataset_1"/> + <param name="output_var" value="IN"/> + <repeat name="operations"> + <conditional name="operation"> + <param name="output_var" value="OUT"/> + <param name="cover_variant" value="COVER"/> + <param name="input_var" value="IN"/> + <param name="operator" value="COVER"/> + <conditional name="minAcc"> + <param name="min_type" value="value"/> + <param name="value" value="1"/> + </conditional> + <conditional name="maxAcc"> + <param name="max_type" value="ANY"/> + </conditional> + <section name="new_regions_attributes"> + <repeat name="new_regions"> + <param name="new_name" value="min_pvalue"/> + <param name="function" value="MIN"/> + <param name="argument" value="pvalue"/> + </repeat> + </section> + <section name="groupby"> + <repeat name="groupby_clause"> + <param name="metajoin_match" value="SIMPLE"/> + <param name="j_att" value="cell"/> + </repeat> + <repeat name="groupby_clause"> + <param name="metajoin_match" value="SIMPLE"/> + <param name="j_att" value="antibody_target"/> + </repeat> + </section> + </conditional> + </repeat> + <output name="query" file="cover1.gmql_query"/> + </test> + <test> + <!-- TEST 14: COVER (Variants) --> + <expand macro="query_intro" name="test_cover2"/> + <expand macro="simple_select" ds="Example_Dataset_1"/> + <param name="output_var" value="IN"/> + <repeat name="operations"> + <conditional name="operation"> + <param name="operator" value="COVER"/> + <param name="output_var" value="OUT1"/> + <param name="cover_variant" value="FLAT"/> + <param name="input_var" value="IN"/> + <conditional name="minAcc"> + <param name="min_type" value="value"/> + <param name="value" value="2"/> + </conditional> + <conditional name="maxAcc"> + <param name="max_type" value="value"/> + <param name="value" value="4"/> + </conditional> + <section name="groupby"> + <repeat name="groupby_clause"> + <param name="metajoin_match" value="SIMPLE"/> + <param name="j_att" value="cell"/> + </repeat> + </section> + </conditional> + </repeat> + <repeat name="operations"> + <conditional name="operation"> + <param name="operator" value="COVER"/> + <param name="output_var" value="OUT2"/> + <param name="cover_variant" value="SUMMIT"/> + <param name="input_var" value="IN"/> + <conditional name="minAcc"> + <param name="min_type" value="value"/> + <param name="value" value="2"/> + </conditional> + <conditional name="maxAcc"> + <param name="max_type" value="value"/> + <param name="value" value="4"/> + </conditional> + <section name="groupby"> + <repeat name="groupby_clause"> + <param name="metajoin_match" value="SIMPLE"/> + <param name="j_att" value="cell"/> + </repeat> + </section> + </conditional> + </repeat> + <repeat name="operations"> + <conditional name="operation"> + <param name="operator" value="COVER"/> + <param name="output_var" value="OUT3"/> + <param name="cover_variant" value="HISTOGRAM"/> + <param name="input_var" value="IN"/> + <conditional name="minAcc"> + <param name="min_type" value="ALL_n"/> + <param name="n" value="2"/> + </conditional> + <conditional name="maxAcc"> + <param name="max_type" value="ALL_n_k"/> + <param name="k" value="1"/> + <param name="n" value="2"/> + </conditional> + <section name="groupby"> + <repeat name="groupby_clause"> + <param name="metajoin_match" value="SIMPLE"/> + <param name="j_att" value="antibody_target"/> + </repeat> + </section> + </conditional> + </repeat> + <output name="query" file="cover2.gmql_query"/> + </test> + <test> + <!-- TEST 15: Query Compilation --> + <expand macro="query_intro" name="test_compile"/> + <repeat name="operations"> + <conditional name="operation"> + <param name="operator" value="SELECT"/> + <conditional name="input"> + <param name="input_type" value="i_ds"/> + <param name="gmql_datasets" value="rep.gmql_repository"/> + <param name="input_ds" value="Example_Dataset_1"/> + <section name="metadata_predicates"> + <conditional name="conditions"> + <param name="ad_flags" value="steps"/> + <param name="negate" value="false"/> + <param name="attribute" value="grant"/> + <param name="condition" value="eq"/> + <param name="value" value="Stam"/> + </conditional> + </section> + <section name="region_predicates"> + <conditional name="conditions"> + <param name="ad_flags" value="strings"/> + <param name="conditions_string" value=""/> + </conditional> + </section> + <section name="semijoin_predicate"> + <param name="condition" value="IN"/> + <param name="ds_ext" value=""/> + </section> + </conditional> + </conditional> + </repeat> + <param name="output_var" value="VAR"/> + <conditional name="materialize"> + <param name="file_name" value="TG"/> + <param name="materialize_result" value="true"/> + <conditional name="choose_op"> + <param name="op" value="compile"/> + </conditional> + </conditional> + <output name="query" file="query.gmql_query"/> + <output name="log" ftype="txt"> + <assert_contents> + <has_text text="COMPILE_SUCCESS"/> + </assert_contents> + </output> + </test> + <test> + <!-- TEST 16: Query Execution --> + <param name="authToken" value="guest2.gmql_user"/> + <param name="query_name" value="testexec"/> + <conditional name="query_create"> + <param name="create" value="yes"/> + </conditional> + <repeat name="operations"> + <conditional name="operation"> + <param name="operator" value="SELECT"/> + <conditional name="input"> + <param name="input_type" value="i_ds"/> + <param name="gmql_datasets" value="rep.gmql_repository"/> + <param name="input_ds" value="Example_Dataset_1"/> + <section name="metadata_predicates"> + <conditional name="conditions"> + <param name="ad_flags" value="steps"/> + <param name="negate" value="false"/> + <param name="attribute" value="grant"/> + <param name="condition" value="eq"/> + <param name="value" value="Stam"/> + </conditional> + </section> + <section name="region_predicates"> + <conditional name="conditions"> + <param name="ad_flags" value="strings"/> + <param name="conditions_string" value=""/> + </conditional> + </section> + <section name="semijoin_predicate"> + <param name="condition" value="IN"/> + <param name="ds_ext" value=""/> + </section> + </conditional> + </conditional> + </repeat> + <param name="output_var" value="VAR"/> + <conditional name="materialize"> + <param name="file_name" value="TG"/> + <param name="materialize_result" value="true"/> + <conditional name="choose_op"> + <param name="op" value="run"/> + <param name="out_format" value="gdm"/> + <param name="import" value="true"/> + </conditional> + </conditional> + <output name="query" file="query.gmql_query"/> + <output name="log" ftype="txt"> + <assert_contents> + <has_text text="SUCCESS"/> + </assert_contents> + </output> + <output name="updated_list" ftype="gmql_repository"> + <assert_contents> + <has_text_matching expression="testexec_\d+_\d+_TG"/> + </assert_contents> + </output> + <collection name="query_results_s" type="list"> + <metadata name="name" value="testexec results"/> + <discovered_dataset designation="S00000" file="TG/S_00000.gdm"/> + <discovered_dataset designation="S00001" file="TG/S_00001.gdm"/> + <discovered_dataset designation="S00002" file="TG/S_00002.gdm"/> + </collection> + <collection name="query_results_m" type="list"> + <metadata name="name" value="testexec results metadata"/> + <discovered_dataset designation="S00000" file="TG/S_00000.gdm.meta"/> + <discovered_dataset designation="S00001" file="TG/S_00001.gdm.meta"/> + <discovered_dataset designation="S00002" file="TG/S_00002.gdm.meta"/> + </collection> + </test> + </tests> + </xml> +</macros> \ No newline at end of file