view gmql_operators_merge_union_diff.xml @ 0:a80c93182db3 draft default tip

planemo upload for repository https://github.com/lu-brn/gmql-galaxy commit 953ee36ceda5814dc9baa03427bc0eb4ee2e93bd-dirty

<macros>
    <import>gmql_queries_macros.xml</import>
    <xml name="merge">
        <expand macro="input_var" name="input_var" label="Input Dataset" optional="false" />
        <expand macro="output_var" />
        <section name="groupby" title="Group Samples" expanded="true"
        help="Grouping metadata attributes can be specified: the samples are then partitioned in groups,
        each with a distinct value of the grouping metadata attributes, and the MERGE operation is applied to each
        group separately, yielding to one sample in the result dataset for each group. Samples without the grouping
        metadata attributes are disregarded">
            <repeat name="group_meta_atts" min="0" title="Metadata Attribute">
                <expand macro="metajoin_attribute" name="j_att" optional="true" >
                    <expand macro="metajoin_options" />
                </expand>
            </repeat>
        </section>
        <expand macro="materialize_stm" />
    </xml>
    <xml name="union">
        <expand macro="input_var" name="input_var_first" label="First Dataset to be unified" optional="false" />
        <expand macro="input_var" name="input_var_second" label="Second Dataset to be unified" optional="false" />
        <expand macro="output_var" />
        <expand macro="materialize_stm" />
    </xml>
    <xml name="difference">
        <param name="input_var_reference" label="Reference Dataset" type="text"
               help="It is he dataset which is copied in the output and from which regions of DS neg are “subtracted”.
               Must be a dataset variable already defined as output of a previous operation.">
            <expand macro="text_val" />
        </param>
        <param name="input_var_negative" label="Dataset to subtract from Reference" type="text"
               help="If any reference region is found to have intersection with a region in this dataset, it is removed from
               the output dataset. Must be a dataset variable already defined as output of a previous operation.">
            <expand macro="text_val" />
        </param>
        <param name="exact_flag" label="Exact matching?" type="boolean" help="If selected, regions are not kept in
        the result only if they exactly matches regions in the reference dataset." />
        <section name="joinby" title="Joinby Conditions" expanded="true"
        help="If attributes are specified, only samples that have the same value for each attributeare considered
        when performing the DIFFERENCE.">
            <repeat name="group_meta_atts" min="0" title="Metadata Attribute">
                <expand macro="metajoin_attribute" name="j_att" optional="true" >
                    <expand macro="metajoin_options" />
                </expand>
            </repeat>
        </section>
        <expand macro="output_var" />
        <expand macro="materialize_stm" />
    </xml>
</macros>