Mercurial > repos > geert-vandeweyer > bamtools_wrappers
changeset 1:76aff7bca1b2 draft
Uploaded
author | geert-vandeweyer |
---|---|
date | Tue, 18 Feb 2014 05:06:20 -0500 |
parents | afa51021226c |
children | 2572b6f85654 |
files | SplitOnRg.xml bamToFastX.xml |
diffstat | 2 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/SplitOnRg.xml Tue Feb 18 04:18:08 2014 -0500 +++ b/SplitOnRg.xml Tue Feb 18 05:06:20 2014 -0500 @@ -4,7 +4,7 @@ <requirement type="package" version="2.3.0">bamtools</requirement> </requirements> <command interpreter="perl"> -SplitOnRG.pl -i '$input1' -o $output1 -O $output1.id -k $dbkey -p $__new_file_path__ +SplitOnRg.pl -i '$input1' -o $output1 -O $output1.id -k $dbkey -p $__new_file_path__ </command> <inputs> <param format="bam" name="input1" type="data" label="BAM file"/>
--- a/bamToFastX.xml Tue Feb 18 04:18:08 2014 -0500 +++ b/bamToFastX.xml Tue Feb 18 05:06:20 2014 -0500 @@ -14,7 +14,7 @@ </param> </inputs> <outputs> -<data format="fastqsanger" name="output" metadata_source="input1" label="$input1.tag (FASTQ/A)"> +<data format="fastqsanger" name="output" metadata_source="input1" > <change_format> <when input="format" value="fasta" format="fasta"/> </change_format>