Mercurial > repos > geert-vandeweyer > coverage_report
comparison readme.rst @ 19:6c7b09220992 draft
new version 0.0.3 (fix on headless R)
| author | geert-vandeweyer |
|---|---|
| date | Thu, 06 Nov 2014 03:35:57 -0500 |
| parents | 6808c39f34cd |
| children |
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| 18:43427b07e6bb | 19:6c7b09220992 |
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| 1 Panel Resequencing Report | 1 Panel Resequencing Report: This wrapper was created by Geert Vandeweyer. It is free to use, adapt and redistribute, but please mention the original source. |
| 2 ========================= | |
| 3 | 2 |
| 4 This wrapper was created by Geert Vandeweyer. It is free to use, adapt and redistribute, but please mention the original source. | |
| 5 | 3 |
| 6 Installation | 4 Installation: The recommended installation is by means of the toolshed_. |
| 7 ============ | |
| 8 | |
| 9 The recommended installation is by means of the toolshed_. | |
| 10 | 5 |
| 11 .. _toolshed: http://toolshed.g2.bx.psu.edu/view/geert-vandeweyer/coverage_report | 6 .. _toolshed: http://toolshed.g2.bx.psu.edu/view/geert-vandeweyer/coverage_report |
| 12 | |
| 13 | 7 |
| 14 Samtools, bedtools and R should be installed automatically by galaxy if not yet available. | 8 Samtools, bedtools and R should be installed automatically by galaxy if not yet available. |
| 15 PdfLatex must be installed manually and added to the PATH. | 9 PdfLatex must be installed manually and added to the PATH. |
| 16 | 10 |
| 17 | 11 |
| 18 History | 12 History: |
| 19 ======= | 13 |
| 20 0.0.1 - Initial release, no dependency handling | 14 0.0.1 - Initial release, no dependency handling |
| 21 0.0.2 - Updated release, following toolshed recommendations. | 15 0.0.2 - Updated release, following toolshed recommendations. |
| 16 0.0.3 - Upgraded to R 3.0.3 (support on headless machines). Update to the documentation(targets bed format). | |
| 22 | 17 |
| 23 | 18 |