Mercurial > repos > geert-vandeweyer > coverage_report
graph
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revised routines. Better handling of collapsing, isoforms and mutiple mapppings. Barplots revised to visualise average base coverage in exon instead of total number of reads in exon draftWed, 29 Nov 2017 08:12:27 -0500, by geert-vandeweyer
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Added BED format check before collapsing regions. draftThu, 12 Feb 2015 09:54:03 -0500, by geert-vandeweyer
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Added (default) option to collapse repetitive bed files draftThu, 12 Feb 2015 08:51:37 -0500, by geert-vandeweyer
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Added (default) option to collapse repetitive BED files. draftThu, 12 Feb 2015 08:51:06 -0500, by geert-vandeweyer
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Correction to png calls to use cairo instead of x11. thanks to Eric Enns for pointing this out. draftMon, 17 Nov 2014 07:10:11 -0500, by geert-vandeweyer
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Correction of tool_dependencies regarding R version draftThu, 06 Nov 2014 04:28:02 -0500, by geert-vandeweyer
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Somehow the tool dependencies got reversed to an old version leading to issues with R png function draftWed, 18 Jun 2014 07:26:16 -0400, by geert-vandeweyer
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Switched to R 3.0.2 from iuc, and moved bedtools to seperate tool_definition draftThu, 20 Feb 2014 08:57:09 -0500, by geert-vandeweyer
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Hard Coded to use /usr/bin/Rscript instead of dependency one. Will revert when X11 issue is resolved. draftMon, 17 Feb 2014 09:49:16 -0500, by geert-vandeweyer