Mercurial > repos > geert-vandeweyer > dc_genotyper

comparison DC_Genotyper_indexes.loc.sample @ 7:8cfdb91bfc14 draft

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Uploaded
author geert-vandeweyer
date Fri, 26 Sep 2014 03:57:06 -0400
parents 92207f2ec144
children a7e7f9b8f538
comparison
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6:5af117ecfc39 7:8cfdb91bfc14
3 #need to supply these files and then create a DC_Genotyper.loc file 3 #need to supply these files and then create a DC_Genotyper.loc file
4 #similar to this one (store it in this directory) that points to 4 #similar to this one (store it in this directory) that points to
5 #the directories in which those files are stored. The DC_Genotyper.loc 5 #the directories in which those files are stored. The DC_Genotyper.loc
6 #file has this format (white space characters are TAB characters): 6 #file has this format (white space characters are TAB characters):
7 # 7 #
8 #<unique_build_id> <display_name> <2bit_path;IGVtools_genome.path> 8 #<unique_build_id> <display_name> <2bit_path,IGVtools_genome.path>
9 # 9 #
10 #for example: 10 #for example:
11 # 11 #
12 #hg19 Human (Homo sapiens): hg19 /depot/data2/galaxy/twobit/hg19.2bit;/depot/data2/galaxy/igvtools/hg19.chrom.sizes 12 #hg19 Human (Homo sapiens): hg19 /depot/data2/galaxy/twobit/hg19.2bit,/depot/data2/galaxy/igvtools/hg19.chrom.sizes
13 # 13 #
14 #then your /depot/data2/galaxy/twobit/ directory 14 #then your /depot/data2/galaxy/twobit/ directory
15 #would need to contain the following 2bit files: 15 #would need to contain the following 2bit files:
16 # 16 #
17 #-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 hg19.2bit 17 #-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 hg19.2bit