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comparison dbsnp_indexes.loc.sample @ 10:a7e7f9b8f538 draft

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author geert-vandeweyer
date Sat, 27 Sep 2014 05:36:34 -0400
parents e8a32d824f39
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9:7cbbf8aaa46c 10:a7e7f9b8f538
3 #need to supply these files and then create a dbsnp_indexes.loc file 3 #need to supply these files and then create a dbsnp_indexes.loc file
4 #similar to this one (store it in this directory) that points to 4 #similar to this one (store it in this directory) that points to
5 #the directories in which those files are stored. The dbsnp_indexes.loc 5 #the directories in which those files are stored. The dbsnp_indexes.loc
6 #file has this format (white space characters are TAB characters): 6 #file has this format (white space characters are TAB characters):
7 # 7 #
8 #<unique_build_id> <display_name> </path/to/dbSNP.vcf.bgz> 8 #<unique_build_id> <dbkey> <display_name> </path/to/dbSNP.vcf.bgz>
9 # 9 #
10 #for example: 10 #for example:
11 # 11 #
12 #hg19 Human (Homo sapiens): hg19 /depot/data2/galaxy/dbsnp/dbsnp_137.hg19.vcf.bgz 12 #hg19 hg19 Human (Homo sapiens): hg19 /depot/data2/galaxy/dbsnp/dbsnp_137.hg19.vcf.bgz
13 #hg19 Human (Homo sapiens): hg19 /depot/data2/galaxy/dbsnp/dbsnp_138.hg19.vcf.bgz 13 #hg19 hg19 Human (Homo sapiens): hg19 /depot/data2/galaxy/dbsnp/dbsnp_138.hg19.vcf.bgz
14 #mm9 Mouse (Mus musculus): mm9 /depot/data2/galaxy/dbsnp/dbsnp_128.mm9.vcf.bgz 14 #mm9 mm9 Mouse (Mus musculus): mm9 /depot/data2/galaxy/dbsnp/dbsnp_128.mm9.vcf.bgz
15 # 15 #
16 #then your /depot/data2/galaxy/dbsnp/ directory 16 #then your /depot/data2/galaxy/dbsnp/ directory
17 #would need to contain the following files: 17 #would need to contain the following files:
18 # 18 #
19 #-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 dbsnp_137.hg19.vcf.bgz 19 #-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 dbsnp_137.hg19.vcf.bgz