diff DC_Genotyper_indexes.loc.sample @ 4:92207f2ec144 draft

Various Fixes and added tool_data_conf

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/DC_Genotyper_indexes.loc.sample	Thu Sep 25 06:01:11 2014 -0400
@@ -0,0 +1,26 @@
+#This is a sample file distributed with Galaxy that enables the DC_Genotyper  
+#tool to locate genome files for use with twoBitToFa, and IGVtools. You will
+#need to supply these files and then create a DC_Genotyper.loc file
+#similar to this one (store it in this directory) that points to
+#the directories in which those files are stored. The DC_Genotyper.loc
+#file has this format (white space characters are TAB characters):
+#
+#<unique_build_id>	<display_name>		<2bit_path;IGVtools_genome.path>
+#
+#for example:
+#
+#hg19	Human (Homo sapiens): hg19		/depot/data2/galaxy/twobit/hg19.2bit;/depot/data2/galaxy/igvtools/hg19.chrom.sizes
+#
+#then your /depot/data2/galaxy/twobit/ directory
+#would need to contain the following 2bit files:
+#
+#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 hg19.2bit
+#-rw-r--r--  1 james    universe 269808 2005-09-13 10:12 mm9.2bit
+#
+# your igvtools folder needs the following files: 
+#
+#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 hg19.chrom.sizes
+#
+# igv chrom.sizes files are tab delimited files. First column is chromosome name, second column is length. Additional columns are ignored. 
+# example genome files are included in the installation location of the package_igvtools repository. 
+