Mercurial > repos > geert-vandeweyer > dc_genotyper
diff dbsnp_indexes.loc.sample @ 0:e8a32d824f39 draft
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| author | geert-vandeweyer |
|---|---|
| date | Thu, 25 Sep 2014 05:24:35 -0400 |
| parents | |
| children | a7e7f9b8f538 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/dbsnp_indexes.loc.sample Thu Sep 25 05:24:35 2014 -0400 @@ -0,0 +1,24 @@ +#This is a sample file distributed with Galaxy that enables the DC_Genotyper +#tool to locate bgzip-compressed and indexed versions of dbSNP. You will +#need to supply these files and then create a dbsnp_indexes.loc file +#similar to this one (store it in this directory) that points to +#the directories in which those files are stored. The dbsnp_indexes.loc +#file has this format (white space characters are TAB characters): +# +#<unique_build_id> <display_name> </path/to/dbSNP.vcf.bgz> +# +#for example: +# +#hg19 Human (Homo sapiens): hg19 /depot/data2/galaxy/dbsnp/dbsnp_137.hg19.vcf.bgz +#hg19 Human (Homo sapiens): hg19 /depot/data2/galaxy/dbsnp/dbsnp_138.hg19.vcf.bgz +#mm9 Mouse (Mus musculus): mm9 /depot/data2/galaxy/dbsnp/dbsnp_128.mm9.vcf.bgz +# +#then your /depot/data2/galaxy/dbsnp/ directory +#would need to contain the following files: +# +#-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 dbsnp_137.hg19.vcf.bgz +#-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 dbsnp_137.hg19.vcf.bgz.tbi +#-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 dbsnp_138.hg19.vcf.bgz +#-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 dbsnp_138.hg19.vcf.bgz.tbi +#-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 dbsnp_128.mm9.vcf.bgz +#-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 dbsnp_128.mm9.vcf.bgz.tbi