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view dbsnp_indexes.loc.sample @ 1:15be98f10c13 draft

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change to readme file regarding the loc files.
author geert-vandeweyer
date Thu, 25 Sep 2014 05:27:45 -0400
parents e8a32d824f39
children a7e7f9b8f538
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#This is a sample file distributed with Galaxy that enables the DC_Genotyper  
#tool to locate bgzip-compressed and indexed versions of dbSNP. You will
#need to supply these files and then create a dbsnp_indexes.loc file
#similar to this one (store it in this directory) that points to
#the directories in which those files are stored. The dbsnp_indexes.loc
#file has this format (white space characters are TAB characters):
#
#<unique_build_id>	<display_name>		</path/to/dbSNP.vcf.bgz>
#
#for example:
#
#hg19	Human (Homo sapiens): hg19		/depot/data2/galaxy/dbsnp/dbsnp_137.hg19.vcf.bgz
#hg19	Human (Homo sapiens): hg19		/depot/data2/galaxy/dbsnp/dbsnp_138.hg19.vcf.bgz
#mm9	Mouse (Mus musculus): mm9		/depot/data2/galaxy/dbsnp/dbsnp_128.mm9.vcf.bgz
#
#then your /depot/data2/galaxy/dbsnp/ directory
#would need to contain the following files:
#
#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 dbsnp_137.hg19.vcf.bgz
#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 dbsnp_137.hg19.vcf.bgz.tbi
#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 dbsnp_138.hg19.vcf.bgz
#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 dbsnp_138.hg19.vcf.bgz.tbi
#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 dbsnp_128.mm9.vcf.bgz
#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 dbsnp_128.mm9.vcf.bgz.tbi