view DC_Genotyper_indexes.loc.sample @ 9:7cbbf8aaa46c draft

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#This is a sample file distributed with Galaxy that enables the DC_Genotyper  
#tool to locate genome files for use with twoBitToFa, and IGVtools. You will
#need to supply these files and then create a DC_Genotyper.loc file
#similar to this one (store it in this directory) that points to
#the directories in which those files are stored. The DC_Genotyper.loc
#file has this format (white space characters are TAB characters):
#
#<unique_build_id>	<display_name>		<2bit_path,IGVtools_genome.path>
#
#for example:
#
#hg19	Human (Homo sapiens): hg19		/depot/data2/galaxy/twobit/hg19.2bit,/depot/data2/galaxy/igvtools/hg19.chrom.sizes
#
#then your /depot/data2/galaxy/twobit/ directory
#would need to contain the following 2bit files:
#
#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 hg19.2bit
#-rw-r--r--  1 james    universe 269808 2005-09-13 10:12 mm9.2bit
#
# your igvtools folder needs the following files: 
#
#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 hg19.chrom.sizes
#
# igv chrom.sizes files are tab delimited files. First column is chromosome name, second column is length. Additional columns are ignored. 
# example genome files are included in the installation location of the package_igvtools repository.