Mercurial > repos > geert-vandeweyer > dc_genotyper

changeset 12:8cc26598eeac draft

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Uploaded
author geert-vandeweyer
date Sat, 27 Sep 2014 05:49:23 -0400
parents 845a87ad254a
children 08c4fb95c3a9
files DC_Genotyper.pl
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/DC_Genotyper.pl	Sat Sep 27 05:38:17 2014 -0400
+++ b/DC_Genotyper.pl	Sat Sep 27 05:49:23 2014 -0400
@@ -25,7 +25,7 @@
 ####################
 # t: target file
 # b: bam file
-# R: 2bit version of reference fasta.
+# R: reference genome files for twobit and IGV.
 # p: number of threads.
 # s: dbsnp file
 # m: minimal coverage (defaults 400x)
@@ -40,7 +40,7 @@
 if (!defined($opts{'R'})) {
 	die("Reference Genomes not specified\n");
 }
-my @refgenomes = split(",",$opts{'r'});
+my @refgenomes = split(",",$opts{'R'});
 if (!-e $refgenomes[0]) {
 	die("'$refgenomes[0]' is not a valid file path.");
 }