# HG changeset patch # User geert-vandeweyer # Date 1367931722 14400 # Node ID 837fafa672d248fe7a0efc7da2c8ef45a59e47f9 # Parent 47070a3859dfadcfafa13b2a058861ca2bbe46d8 common uncompressed files are now gzipped upons transfer to the ftp directory to save space. diff -r 47070a3859df -r 837fafa672d2 DownloadFiles.py --- a/DownloadFiles.py Thu Jan 10 04:09:38 2013 -0500 +++ b/DownloadFiles.py Tue May 07 09:02:02 2013 -0400 @@ -29,7 +29,7 @@ fout.write("

    ") now = datetime.datetime.now() date=str(now)[:10] - fout.write("
  1. %s
    2. " %(len(sys.argv))) + #fout.write("
  2. %s
    3. " %(len(sys.argv))) # compose ftp storage location ftpdir="%s/%s/" %(ftpdirconfig,useremail) if len(folder) == 0: @@ -46,9 +46,15 @@ while filecounter < len(sys.argv): inp = sys.argv[filecounter] name = sys.argv[(filecounter+1)] + name = name.replace(':','_') + name = name.replace(' ','_') + name = name.replace('@','_AT_') ext = sys.argv[(filecounter+2)] # copy files to tmp dir & filenames os.system("cp '%s' '%s/%s.%s'" %(inp, storedir,name,ext)) + ## gzip if fastq/fastqsanger/vcf + if ( ext == "fastq" or ext == "fastqsanger" or ext == "vcf" or ext == "sam" or ext == "txt"): + os.system("gzip -9 '%s/%s.%s'" %(storedir,name,ext)) fout.write("
  3. %s.%s
    4. " %(name,ext)) filecounter +=3