changeset 0:272bdc723756 draft

Initial Commit

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/DownloadFiles.xml	Thu Jan 10 04:08:33 2013 -0500
@@ -0,0 +1,36 @@
+<tool id="DownloadFiles" name="Files_2_FTP" version="0.0.1">
+  <description>Copy Files to your FTP account for easy download</description>
+  <command interpreter="python">DownloadFiles.py "$outfile" "$__user_email__" "$foldername"  "$__app__.config.ftp_upload_dir"
+	#for $q in $datafiles
+		"${q.input2}" "${q.input2.display_name}" "${q.input2.ext}"
+	#end for
+
+</command>
+  <inputs>
+  <param name="foldername" type="text" label="Folder To Create on FTP server" help="This folder will hold the transferred data"/>
+  <repeat name="datafiles" title="Data Files to download">
+	<!-- <param format="bam,tabular,bed,ab1,afg,axt,bedgraph,bedstrict,bed6,bed12,len,bigbed,bigwig,coverage,csv,customtrack,bowtie_color_index,bowtie_base_index,fastq,fastqsanger,fastqsolexa,fastqcssanger,fastqillumina,eland,elandmulti,genetrack,gff,gff3,gif,gmaj.zip,gtf,html,interval,picard_interval_list,gatk_interval,gatk_dbsnp,jpg,laj,lav,maf,mafcustomtrack,pdf,pileup,png,qual,qualsolexa,qualillumina,qualsolid,qual454,Roadmaps,sam,scf,Sequences,sff,svg,taxonomy,txt,memexml,blastxml,vcf,wsf,velvet,wig" name="input2" type="data" label="Select" /> -->
+	<param name="input2" type="data" label="Select" />
+  </repeat> 
+
+  </inputs>
+  <outputs>
+    <data format="html" name="outfile" />
+  </outputs>
+
+<help>
+**What it does**
+
+Copies selected datasets to your FTP account on this galaxy instance. You can then use an FTP client to download the files.  
+The files will be placed in a subfolder with the specified name. If no name is specified, a folder with the current data will be used. 
+**Input**
+
+Any dataset from the history.
+
+**Output**
+
+An html file, with an overview of the copied files.
+
+</help>
+
+</tool>