Mercurial > repos > geert-vandeweyer > package_bedtools_2_18_2
comparison tool_dependencies.xml @ 0:35905f2ae9f4 draft default tip
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author | geert-vandeweyer |
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date | Thu, 20 Feb 2014 08:53:22 -0500 |
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-1:000000000000 | 0:35905f2ae9f4 |
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1 <?xml version="1.0"?> | |
2 <tool_dependency> | |
3 <package name="bedtools" version="2.18.2"> | |
4 <install version="1.0"> | |
5 <actions> | |
6 <action type="download_by_url" target_filename="bedtools2-2.18.2.tar.gz" >https://github.com/arq5x/bedtools2/archive/v2.18.2.tar.gz</action> | |
7 <action type="shell_command">make</action> | |
8 <action type="move_file"> | |
9 <source>bin/</source> | |
10 <destination>$INSTALL_DIR/bin</destination> | |
11 </action> | |
12 <action type="set_environment"> | |
13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | |
14 </action> | |
15 </actions> | |
16 </install> | |
17 <readme> | |
18 Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For example, bedtools allows one to intersect, merge, count, complement, and shuffle genomic intervals from multiple files in widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF. | |
19 </readme> | |
20 </package> | |
21 </tool_dependency> |