Mercurial > repos > geert-vandeweyer > package_bedtools_2_18_2
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author | geert-vandeweyer |
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date | Thu, 20 Feb 2014 08:53:22 -0500 |
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<?xml version="1.0"?> <tool_dependency> <package name="bedtools" version="2.18.2"> <install version="1.0"> <actions> <action type="download_by_url" target_filename="bedtools2-2.18.2.tar.gz" >https://github.com/arq5x/bedtools2/archive/v2.18.2.tar.gz</action> <action type="shell_command">make</action> <action type="move_file"> <source>bin/</source> <destination>$INSTALL_DIR/bin</destination> </action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> </action> </actions> </install> <readme> Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For example, bedtools allows one to intersect, merge, count, complement, and shuffle genomic intervals from multiple files in widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF. </readme> </package> </tool_dependency>