annotate tool_dependencies.xml @ 1:edaadfa7e304 draft

Switched to libpng from boris due to errors in the devteam version installation

<?xml version="1.0"?>
<tool_dependency>
    <package name="R" version="2.11.0">
        <repository changeset_revision="8d0a55bf7aaf" name="package_r_2_11_0" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="libpng" version="1.6.7">
	<repository changeseet_revision="7de5acbf6c85" changeset_revision="7de5acbf6c85" name="package_libpng_1_6_7" owner="boris" toolshed="http://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="package_R_2.11.0_png">
	<install version="1.0">
		<actions>
			<action type="download_file">http://cran.r-project.org/src/contrib/png_0.1-7.tar.gz</action>
			<action type="set_environment_for_install">
                 	   <repository changeset_revision="8d0a55bf7aaf" name="package_r_2_11_0" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu">
                        	<package name="R" version="2.11.0" />
	                   </repository>
                	</action>

			<action type="shell_command">export R_LIBS_USER=$INSTALL_DIR &amp;&amp; R CMD INSTALL png_0.1-7.tar.gz</action>
			<action type="set_environment">
              		      <environment_variable action="prepend_to" name="R_LIBS_USER">$INSTALL_DIR</environment_variable>
                	</action>
		</actions>
	</install>
	<readme>png libs for R 2.11.0. Needed for creation of plots and not activated in the default R package (can be specified on compile time).</readme>
   </package>
			
</tool_dependency>