Mercurial > repos > geert-vandeweyer > varscan_wrapper
diff output.validation @ 4:572397bbe057 draft default tip
Added Xmx10G setting to both varscan_somatic wrappers
| author | geert-vandeweyer |
|---|---|
| date | Wed, 26 Mar 2014 05:24:22 -0400 |
| parents | b2ad469e0ff9 |
| children |
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--- a/output.validation Tue Mar 11 06:11:19 2014 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,441 +0,0 @@ -##fileformat=VCFv4.1 -##source=VarScan2 -##INFO=<ID=DP,Number=1,Type=Integer,Description="Total depth of quality bases"> -##INFO=<ID=SOMATIC,Number=0,Type=Flag,Description="Indicates if record is a somatic mutation"> -##INFO=<ID=SS,Number=1,Type=String,Description="Somatic status of variant (0=Reference,1=Germline,2=Somatic,3=LOH, or 5=Unknown)"> -##INFO=<ID=SSC,Number=1,Type=String,Description="Somatic score in Phred scale (0-255) derived from somatic p-value"> -##INFO=<ID=GPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor+normal versus no variant for Germline calls"> -##INFO=<ID=SPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor versus normal for Somatic/LOH calls"> -##FILTER=<ID=str10,Description="Less than 10% or more than 90% of variant supporting reads on one strand"> -##FILTER=<ID=indelError,Description="Likely artifact due to indel reads at this position"> -##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> -##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> -##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> -##FORMAT=<ID=RD,Number=1,Type=Integer,Description="Depth of reference-supporting bases (reads1)"> -##FORMAT=<ID=AD,Number=1,Type=Integer,Description="Depth of variant-supporting bases (reads2)"> -##FORMAT=<ID=FREQ,Number=1,Type=String,Description="Variant allele frequency"> -##FORMAT=<ID=DP4,Number=1,Type=String,Description="Strand read counts: ref/fwd, ref/rev, var/fwd, var/rev"> -#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NORMAL TUMOR -chr1 11190596 . T . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:13,7,0,0 0/0:.:8:8:0:0%:6,2,0,0 -chr1 11190597 . T . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:13,7,0,0 0/0:.:8:8:0:0%:6,2,0,0 -chr1 11190598 . C . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:13,7,0,0 0/0:.:8:7:0:0%:5,2,0,0 -chr1 11190599 . T . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:13,7,0,0 0/0:.:8:7:0:0%:6,1,0,0 -chr1 11190600 . T . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:13,7,0,0 0/0:.:8:7:0:0%:5,2,0,0 -chr1 11190601 . C . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:13,7,0,0 0/0:.:8:8:0:0%:6,2,0,0 -chr1 11190602 . T . PASS DP=32;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:21:19:0:0%:13,6,0,0 0/0:.:11:8:0:0%:6,2,0,0 -chr1 11190603 . G . PASS DP=32;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:21:20:0:0%:14,6,0,0 0/0:.:11:11:0:0%:9,2,0,0 -chr1 11190604 . C . PASS DP=34;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:21:20:0:0%:13,7,0,0 0/0:.:13:12:0:0%:8,4,0,0 -chr1 11190605 . A . PASS DP=34;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:21:20:0:0%:13,7,0,0 0/0:.:13:10:0:0%:8,2,0,0 -chr1 11190606 . G . PASS DP=36;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:22:20:0:0%:13,7,0,0 0/0:.:14:12:0:0%:8,4,0,0 -chr1 11190607 . C . PASS DP=36;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:22:22:0:0%:13,9,0,0 0/0:.:14:14:0:0%:9,5,0,0 -chr1 11190608 . G . PASS DP=36;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:22:22:0:0%:13,9,0,0 0/0:.:14:12:0:0%:7,5,0,0 -chr1 11190609 . G . PASS DP=37;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:22:22:0:0%:13,9,0,0 0/0:.:15:14:0:0%:9,5,0,0 -chr1 11190610 . C . PASS DP=37;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:22:22:0:0%:13,9,0,0 0/0:.:15:15:0:0%:9,6,0,0 -chr1 11190611 . G . PASS DP=37;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:22:21:0:0%:13,8,0,0 0/0:.:15:15:0:0%:9,6,0,0 -chr1 11190612 . A . PASS DP=38;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:23:21:0:0%:13,8,0,0 0/0:.:15:13:0:0%:8,5,0,0 -chr1 11190613 . T . PASS DP=39;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:24:24:0:0%:13,11,0,0 0/0:.:15:14:0:0%:8,6,0,0 -chr1 11190614 . G . PASS DP=40;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:25:0:0%:13,12,0,0 0/0:.:15:15:0:0%:9,6,0,0 -chr1 11190615 . G . PASS DP=40;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:25:0:0%:13,12,0,0 0/0:.:15:15:0:0%:9,6,0,0 -chr1 11190616 . G . PASS DP=40;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:25:0:0%:13,12,0,0 0/0:.:15:15:0:0%:9,6,0,0 -chr1 11190617 . G . PASS DP=40;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:24:0:0%:13,11,0,0 0/0:.:15:15:0:0%:9,6,0,0 -chr1 11190618 . T . PASS DP=40;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:24:0:0%:12,12,0,0 0/0:.:15:13:0:0%:8,5,0,0 -chr1 11190619 . G . PASS DP=40;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:25:0:0%:13,12,0,0 0/0:.:15:15:0:0%:9,6,0,0 -chr1 11190620 . G . PASS DP=40;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:24:0:0%:13,11,0,0 0/0:.:15:15:0:0%:9,6,0,0 -chr1 11190621 . G . PASS DP=40;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:25:0:0%:13,12,0,0 0/0:.:15:14:0:0%:8,6,0,0 -chr1 11190622 . G . PASS DP=41;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:24:0:0%:13,11,0,0 0/0:.:16:14:0:0%:8,6,0,0 -chr1 11190623 . C . PASS DP=42;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:24:0:0%:12,12,0,0 0/0:.:17:17:0:0%:9,8,0,0 -chr1 11190624 . T . PASS DP=42;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:25:0:0%:13,12,0,0 0/0:.:17:17:0:0%:9,8,0,0 -chr1 11190625 . G . PASS DP=42;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:25:0:0%:13,12,0,0 0/0:.:17:17:0:0%:9,8,0,0 -chr1 11190626 . T . PASS DP=42;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:25:0:0%:13,12,0,0 0/0:.:17:17:0:0%:9,8,0,0 -chr1 11190627 . T . PASS DP=42;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:23:0:0%:11,12,0,0 0/0:.:17:16:0:0%:8,8,0,0 -chr1 11190628 . C . PASS DP=42;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:25:0:0%:13,12,0,0 0/0:.:17:16:0:0%:9,7,0,0 -chr1 11190629 . T . PASS DP=42;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:25:0:0%:13,12,0,0 0/0:.:17:16:0:0%:9,7,0,0 -chr1 11190630 . C . PASS DP=41;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:25:0:0%:13,12,0,0 0/0:.:16:16:0:0%:9,7,0,0 -chr1 11190631 . G . PASS DP=40;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:25:0:0%:13,12,0,0 0/0:.:15:15:0:0%:8,7,0,0 -chr1 11190632 . G . PASS DP=40;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:25:0:0%:13,12,0,0 0/0:.:15:15:0:0%:8,7,0,0 -chr1 11190633 . T . PASS DP=42;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:27:24:0:0%:11,13,0,0 0/0:.:15:15:0:0%:8,7,0,0 -chr1 11190634 . G . PASS DP=42;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:27:26:0:0%:14,12,0,0 0/0:.:15:14:0:0%:8,6,0,0 -chr1 11190635 . C . PASS DP=42;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:27:27:0:0%:14,13,0,0 0/0:.:15:14:0:0%:7,7,0,0 -chr1 11190636 . T . PASS DP=42;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:27:26:0:0%:13,13,0,0 0/0:.:15:14:0:0%:7,7,0,0 -chr1 11190637 . C . PASS DP=41;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:27:26:0:0%:13,13,0,0 0/0:.:14:14:0:0%:7,7,0,0 -chr1 11190638 . T . PASS DP=41;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:27:27:0:0%:14,13,0,0 0/0:.:14:14:0:0%:7,7,0,0 -chr1 11190639 . C . PASS DP=41;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:27:27:0:0%:14,13,0,0 0/0:.:14:14:0:0%:7,7,0,0 -chr1 11190640 . G . PASS DP=41;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:27:26:0:0%:13,13,0,0 0/0:.:14:14:0:0%:7,7,0,0 -chr1 11190641 . G . PASS DP=41;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:27:27:0:0%:14,13,0,0 0/0:.:14:14:0:0%:7,7,0,0 -chr1 11190642 . C . PASS DP=46;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:27:27:0:0%:15,12,0,0 0/0:.:19:16:0:0%:9,7,0,0 -chr1 11190643 . C . PASS DP=50;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:29:29:0:0%:15,14,0,0 0/0:.:21:19:0:0%:10,9,0,0 -chr1 11190644 . T . PASS DP=51;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:30:30:0:0%:15,15,0,0 0/0:.:21:21:0:0%:12,9,0,0 -chr1 11190645 . C . PASS DP=52;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:30:29:0:0%:15,14,0,0 0/0:.:22:21:0:0%:12,9,0,0 -chr1 11190646 . G A . PASS DP=53;SOMATIC;SS=2;SSC=13;GPV=1E0;SPV=4.429E-2 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:31:31:0:0%:15,16,0,0 0/1:.:22:15:3:16.67%:9,6,1,2 -chr1 11190647 . C . PASS DP=53;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:31:29:0:0%:13,16,0,0 0/0:.:22:20:0:0%:10,10,0,0 -chr1 11190648 . T . PASS DP=53;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:31:31:0:0%:15,16,0,0 0/0:.:22:20:0:0%:10,10,0,0 -chr1 11190649 . C . PASS DP=53;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:31:31:0:0%:15,16,0,0 0/0:.:22:22:0:0%:12,10,0,0 -chr1 11190650 . T . PASS DP=53;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:31:31:0:0%:15,16,0,0 0/0:.:22:22:0:0%:12,10,0,0 -chr1 11190651 . C . PASS DP=53;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:30:30:0:0%:14,16,0,0 0/0:.:23:21:0:0%:11,10,0,0 -chr1 11190652 . A . PASS DP=40;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:21:19:0:0%:10,9,0,0 0/0:.:19:17:0:0%:9,8,0,0 -chr1 11190653 . C . PASS DP=37;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:18:17:0:0%:7,10,0,0 0/0:.:19:19:0:0%:9,10,0,0 -chr1 11190654 . T . PASS DP=37;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:18:18:0:0%:8,10,0,0 0/0:.:19:17:0:0%:9,8,0,0 -chr1 11190655 . G . PASS DP=30;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:16:15:0:0%:7,8,0,0 0/0:.:14:14:0:0%:6,8,0,0 -chr1 11190656 . T . PASS DP=30;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:16:15:0:0%:6,9,0,0 0/0:.:14:14:0:0%:6,8,0,0 -chr1 11190657 . T . PASS DP=30;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:16:15:0:0%:6,9,0,0 0/0:.:14:13:0:0%:5,8,0,0 -chr1 11190658 . G . PASS DP=30;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:16:15:0:0%:7,8,0,0 0/0:.:14:14:0:0%:6,8,0,0 -chr1 11190659 . C . PASS DP=30;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:16:14:0:0%:5,9,0,0 0/0:.:14:13:0:0%:6,7,0,0 -chr1 11190660 . T . PASS DP=31;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:17:17:0:0%:7,10,0,0 0/0:.:14:14:0:0%:6,8,0,0 -chr1 11190661 . G . PASS DP=31;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:17:16:0:0%:7,9,0,0 0/0:.:14:14:0:0%:6,8,0,0 -chr1 11190662 . C . PASS DP=31;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:17:16:0:0%:6,10,0,0 0/0:.:14:14:0:0%:6,8,0,0 -chr1 11190663 . C . PASS DP=31;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:17:17:0:0%:7,10,0,0 0/0:.:14:14:0:0%:6,8,0,0 -chr1 11190664 . C . PASS DP=31;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:17:15:0:0%:6,9,0,0 0/0:.:14:14:0:0%:6,8,0,0 -chr1 11190665 . T . PASS DP=31;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:17:16:0:0%:7,9,0,0 0/0:.:14:8:0:0%:4,4,0,0 -chr1 11190666 . C . PASS DP=31;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:17:16:0:0%:7,9,0,0 0/0:.:14:12:0:0%:6,6,0,0 -chr1 11190667 . G . PASS DP=32;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 1/1:.:17:16:0:0%:7,9,0,0 1/1:.:15:15:0:0%:6,9,0,0 -chr1 11190668 . G . PASS DP=32;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 1/1:.:17:16:0:0%:7,9,0,0 1/1:.:15:15:0:0%:6,9,0,0 -chr1 11190669 . T A . str10 DP=32;SS=0;SSC=0;GPV=1E0;SPV=4.8148E-1 GT:GQ:DP:RD:AD:FREQ:DP4 1/1:.:17:14:0:0%:5,9,0,0 1/1:.:15:12:1:7.69%:4,8,1,0 -chr1 11190670 . G . PASS DP=32;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 1/1:.:17:14:0:0%:6,8,0,0 1/1:.:15:10:0:0%:5,5,0,0 -chr1 11190671 . C . PASS DP=32;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 1/1:.:17:15:0:0%:5,10,0,0 1/1:.:15:14:0:0%:6,8,0,0 -chr1 11190672 . T . PASS DP=32;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 1/1:.:17:17:0:0%:7,10,0,0 1/1:.:15:15:0:0%:6,9,0,0 -chr1 11190673 . G . PASS DP=32;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 1/1:.:17:17:0:0%:7,10,0,0 1/1:.:15:13:0:0%:5,8,0,0 -chr1 11190674 . G . PASS DP=32;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 1/1:.:17:13:0:0%:7,6,0,0 1/1:.:15:15:0:0%:6,9,0,0 -chr1 11190675 . C . PASS DP=32;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 1/1:.:17:15:0:0%:5,10,0,0 1/1:.:15:14:0:0%:5,9,0,0 -chr1 11190676 . A . PASS DP=32;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 1/1:.:17:15:0:0%:6,9,0,0 1/1:.:15:14:0:0%:5,9,0,0 -chr1 11190677 . G . PASS DP=32;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 1/1:.:17:17:0:0%:7,10,0,0 1/1:.:15:15:0:0%:6,9,0,0 -chr1 11190678 . T . PASS DP=32;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 1/1:.:17:13:0:0%:5,8,0,0 1/1:.:15:15:0:0%:6,9,0,0 -chr1 11190679 . G . PASS DP=32;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 1/1:.:17:17:0:0%:7,10,0,0 1/1:.:15:14:0:0%:6,8,0,0 -chr1 11190680 . G . PASS DP=31;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 1/1:.:16:16:0:0%:7,9,0,0 1/1:.:15:15:0:0%:6,9,0,0 -chr1 11190681 . T . PASS DP=31;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 1/1:.:16:16:0:0%:7,9,0,0 1/1:.:15:15:0:0%:6,9,0,0 -chr1 11190682 . G . PASS DP=31;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 1/1:.:16:16:0:0%:7,9,0,0 1/1:.:15:13:0:0%:6,7,0,0 -chr1 11190683 . G . PASS DP=31;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 1/1:.:16:16:0:0%:7,9,0,0 1/1:.:15:14:0:0%:6,8,0,0 -chr1 11190684 . T . PASS DP=30;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 1/1:.:16:14:0:0%:5,9,0,0 1/1:.:14:13:0:0%:4,9,0,0 -chr1 11190685 . G . PASS DP=30;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 1/1:.:16:16:0:0%:7,9,0,0 1/1:.:14:14:0:0%:5,9,0,0 -chr1 11190686 . G . PASS DP=30;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 1/1:.:16:16:0:0%:7,9,0,0 1/1:.:14:12:0:0%:5,7,0,0 -chr1 11190687 . C . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 1/1:.:16:15:0:0%:6,9,0,0 1/1:.:12:11:0:0%:3,8,0,0 -chr1 11190688 . A . PASS DP=27;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 1/1:.:15:15:0:0%:6,9,0,0 1/1:.:12:12:0:0%:4,8,0,0 -chr1 11190689 . G . PASS DP=27;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 1/1:.:15:15:0:0%:6,9,0,0 1/1:.:12:11:0:0%:3,8,0,0 -chr1 11190690 . T . PASS DP=27;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 1/1:.:15:14:0:0%:5,9,0,0 1/1:.:12:10:0:0%:4,6,0,0 -chr1 11190691 . G . PASS DP=26;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 1/1:.:14:14:0:0%:5,9,0,0 1/1:.:12:12:0:0%:4,8,0,0 -chr1 11190692 . G . PASS DP=26;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 1/1:.:14:13:0:0%:5,8,0,0 1/1:.:12:11:0:0%:4,7,0,0 -chr1 11190693 . C . PASS DP=25;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 1/1:.:14:13:0:0%:4,9,0,0 1/1:.:11:9:0:0%:3,6,0,0 -chr1 11190694 . G . PASS DP=25;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 1/1:.:14:13:0:0%:4,9,0,0 1/1:.:11:9:0:0%:2,7,0,0 -chr1 11190695 . G . PASS DP=23;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 1/1:.:12:12:0:0%:3,9,0,0 1/1:.:11:11:0:0%:3,8,0,0 -chr1 11319318 . A . PASS DP=21;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:12:12:0:0%:7,5,0,0 0/0:.:9:6:0:0%:4,2,0,0 -chr1 11319319 . T . PASS DP=21;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:12:9:0:0%:4,5,0,0 0/0:.:9:9:0:0%:5,4,0,0 -chr1 11319320 . G . PASS DP=21;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:12:11:0:0%:7,4,0,0 0/0:.:9:9:0:0%:5,4,0,0 -chr1 11319321 . G . PASS DP=21;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:12:12:0:0%:8,4,0,0 0/0:.:9:9:0:0%:5,4,0,0 -chr1 11319322 . T G . PASS DP=22;SS=0;SSC=0;GPV=1E0;SPV=5E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:13:8:1:11.11%:5,3,0,1 0/0:.:9:9:0:0%:5,4,0,0 -chr1 11319323 . G . PASS DP=23;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:14:14:0:0%:9,5,0,0 0/0:.:9:8:0:0%:4,4,0,0 -chr1 11319324 . A . PASS DP=23;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:14:14:0:0%:9,5,0,0 0/0:.:9:9:0:0%:5,4,0,0 -chr1 11319325 . C . PASS DP=23;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:14:13:0:0%:8,5,0,0 0/0:.:9:9:0:0%:5,4,0,0 -chr1 11319326 . A . PASS DP=23;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:14:14:0:0%:9,5,0,0 0/0:.:9:9:0:0%:5,4,0,0 -chr1 11319327 . T . PASS DP=23;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:14:12:0:0%:7,5,0,0 0/0:.:9:7:0:0%:5,2,0,0 -chr1 11319328 . A . PASS DP=24;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:15:15:0:0%:9,6,0,0 0/0:.:9:9:0:0%:5,4,0,0 -chr1 11319329 . G . PASS DP=24;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:15:14:0:0%:8,6,0,0 0/0:.:9:7:0:0%:5,2,0,0 -chr1 11319330 . T . PASS DP=24;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:15:15:0:0%:9,6,0,0 0/0:.:9:9:0:0%:5,4,0,0 -chr1 11319331 . G . PASS DP=24;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:15:14:0:0%:9,5,0,0 0/0:.:9:7:0:0%:5,2,0,0 -chr1 11319332 . C . PASS DP=24;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:15:15:0:0%:9,6,0,0 0/0:.:9:7:0:0%:5,2,0,0 -chr1 11319333 . T . PASS DP=24;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:15:13:0:0%:7,6,0,0 0/0:.:9:9:0:0%:5,4,0,0 -chr1 11319334 . G . PASS DP=24;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:15:15:0:0%:9,6,0,0 0/0:.:9:9:0:0%:5,4,0,0 -chr1 11319335 . G . PASS DP=24;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:15:15:0:0%:9,6,0,0 0/0:.:9:9:0:0%:5,4,0,0 -chr1 45292432 . C . PASS DP=40;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:32:31:0:0%:14,17,0,0 0/0:.:8:7:0:0%:2,5,0,0 -chr1 45292433 . T . PASS DP=40;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:32:32:0:0%:15,17,0,0 0/0:.:8:7:0:0%:2,5,0,0 -chr1 45292434 . G . PASS DP=40;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:32:30:0:0%:15,15,0,0 0/0:.:8:8:0:0%:3,5,0,0 -chr1 45292435 . G C . PASS DP=40;SS=0;SSC=0;GPV=1E0;SPV=8.2051E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:32:31:1:3.12%:15,16,0,1 0/0:.:8:7:0:0%:3,4,0,0 -chr1 45292436 . C . PASS DP=40;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:32:30:0:0%:14,16,0,0 0/0:.:8:7:0:0%:3,4,0,0 -chr1 45292437 . G . PASS DP=40;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:32:32:0:0%:15,17,0,0 0/0:.:8:8:0:0%:3,5,0,0 -chr1 45292438 . G . PASS DP=40;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:32:32:0:0%:15,17,0,0 0/0:.:8:8:0:0%:3,5,0,0 -chr1 45292439 . G . PASS DP=40;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:32:32:0:0%:15,17,0,0 0/0:.:8:8:0:0%:3,5,0,0 -chr1 45292440 . A . PASS DP=38;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:30:28:0:0%:13,15,0,0 0/0:.:8:8:0:0%:3,5,0,0 -chr1 45292441 . C . PASS DP=38;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:30:28:0:0%:12,16,0,0 0/0:.:8:8:0:0%:3,5,0,0 -chr1 45292442 . T A . PASS DP=38;SS=0;SSC=0;GPV=1E0;SPV=8.3333E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:30:29:1:3.33%:13,16,1,0 0/0:.:8:6:0:0%:3,3,0,0 -chr1 45293099 . C . PASS DP=20;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:12:12:0:0%:6,6,0,0 0/0:.:8:7:0:0%:3,4,0,0 -chr1 45293100 . A . PASS DP=20;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:12:11:0:0%:5,6,0,0 0/0:.:8:5:0:0%:2,3,0,0 -chr1 45293101 . G . PASS DP=20;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:12:12:0:0%:6,6,0,0 0/0:.:8:6:0:0%:2,4,0,0 -chr1 45293102 . C . PASS DP=20;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:12:12:0:0%:6,6,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr1 45293103 . C . PASS DP=20;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:12:12:0:0%:6,6,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr1 45293104 . A . PASS DP=20;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:12:12:0:0%:6,6,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr1 45293105 . G . PASS DP=22;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:14:14:0:0%:6,8,0,0 0/0:.:8:7:0:0%:3,4,0,0 -chr1 45293106 . G . PASS DP=22;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:14:13:0:0%:6,7,0,0 0/0:.:8:7:0:0%:4,3,0,0 -chr1 45293107 . T . PASS DP=22;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:14:14:0:0%:6,8,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr1 45293108 . G . PASS DP=23;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:15:15:0:0%:6,9,0,0 0/0:.:8:6:0:0%:3,3,0,0 -chr1 45293109 . C C . str10 DP=23;SS=0;SSC=0;GPV=5.3885E-2;SPV=3.7799E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/1:.:15:13:2:13.33%:5,8,1,1 0/1:.:8:5:2:28.57%:3,2,0,2 -chr1 45293110 . G . PASS DP=23;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:15:14:0:0%:6,8,0,0 0/0:.:8:6:0:0%:2,4,0,0 -chr1 45293111 . G . PASS DP=24;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:16:16:0:0%:6,10,0,0 0/0:.:8:6:0:0%:2,4,0,0 -chr1 45293112 . G . PASS DP=24;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:16:16:0:0%:6,10,0,0 0/0:.:8:7:0:0%:3,4,0,0 -chr1 45293113 . G . PASS DP=24;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:16:15:0:0%:6,9,0,0 0/0:.:8:7:0:0%:3,4,0,0 -chr1 45293114 . T . PASS DP=24;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:16:15:0:0%:5,10,0,0 0/0:.:8:5:0:0%:1,4,0,0 -chr1 45293115 . G . PASS DP=24;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:16:15:0:0%:6,9,0,0 0/0:.:8:7:0:0%:3,4,0,0 -chr1 45293116 . C . PASS DP=24;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:16:15:0:0%:5,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr1 45293117 . C . PASS DP=24;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:16:16:0:0%:6,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr1 45293118 . T T . PASS DP=24;SS=0;SSC=0;GPV=5.4264E-2;SPV=4.3478E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/1:.:16:13:2:13.33%:4,9,1,1 0/1:.:8:6:2:25%:3,3,1,1 -chr1 45293119 . G . PASS DP=24;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:16:14:0:0%:5,9,0,0 0/0:.:8:6:0:0%:3,3,0,0 -chr1 45293120 . G . PASS DP=24;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:16:14:0:0%:5,9,0,0 0/0:.:8:6:0:0%:3,3,0,0 -chr1 45293121 . G . PASS DP=23;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:15:13:0:0%:4,9,0,0 0/0:.:8:6:0:0%:3,3,0,0 -chr1 45293122 . T . PASS DP=23;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:15:14:0:0%:5,9,0,0 0/0:.:8:7:0:0%:3,4,0,0 -chr1 45293123 . G . PASS DP=23;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:15:15:0:0%:5,10,0,0 0/0:.:8:6:0:0%:4,2,0,0 -chr1 45293124 . G . PASS DP=23;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:15:15:0:0%:5,10,0,0 0/0:.:8:7:0:0%:4,3,0,0 -chr1 45293284 . T . PASS DP=31;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:23:21:0:0%:10,11,0,0 0/0:.:8:6:0:0%:3,3,0,0 -chr1 45293285 . G . PASS DP=31;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:23:21:0:0%:12,9,0,0 0/0:.:8:7:0:0%:5,2,0,0 -chr1 45293286 . C . PASS DP=32;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:23:19:0:0%:8,11,0,0 0/0:.:9:7:0:0%:3,4,0,0 -chr1 45293287 . C . PASS DP=32;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:23:22:0:0%:11,11,0,0 0/0:.:9:9:0:0%:5,4,0,0 -chr1 45293288 . C . PASS DP=34;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:25:0:0%:14,11,0,0 0/0:.:9:9:0:0%:5,4,0,0 -chr1 45293289 . C . PASS DP=34;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:21:0:0%:13,8,0,0 0/0:.:9:9:0:0%:5,4,0,0 -chr1 45293290 . G . PASS DP=34;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:24:0:0%:13,11,0,0 0/0:.:9:7:0:0%:3,4,0,0 -chr1 45293291 . A . PASS DP=34;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:22:0:0%:11,11,0,0 0/0:.:9:8:0:0%:4,4,0,0 -chr1 45293292 . G . PASS DP=34;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:24:0:0%:14,10,0,0 0/0:.:9:7:0:0%:4,3,0,0 -chr1 45293293 . G . PASS DP=34;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:23:0:0%:14,9,0,0 0/0:.:9:7:0:0%:5,2,0,0 -chr1 45293294 . C . PASS DP=34;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:23:0:0%:12,11,0,0 0/0:.:9:7:0:0%:3,4,0,0 -chr1 45293295 . A . PASS DP=34;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:23:0:0%:14,9,0,0 0/0:.:9:9:0:0%:5,4,0,0 -chr1 45293296 . C . PASS DP=34;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:25:0:0%:14,11,0,0 0/0:.:9:9:0:0%:5,4,0,0 -chr1 45293297 . C . PASS DP=34;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:24:0:0%:13,11,0,0 0/0:.:9:8:0:0%:4,4,0,0 -chr1 45293298 . A . PASS DP=34;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:24:0:0%:14,10,0,0 0/0:.:9:7:0:0%:5,2,0,0 -chr1 45293299 . C . PASS DP=34;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:25:0:0%:14,11,0,0 0/0:.:9:9:0:0%:5,4,0,0 -chr1 45293300 . A . PASS DP=34;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:22:0:0%:14,8,0,0 0/0:.:9:8:0:0%:5,3,0,0 -chr1 45293301 . T . PASS DP=34;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:24:0:0%:13,11,0,0 0/0:.:9:8:0:0%:5,3,0,0 -chr1 45293302 . C . PASS DP=34;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:25:0:0%:14,11,0,0 0/0:.:9:9:0:0%:5,4,0,0 -chr1 45293303 . C . PASS DP=34;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:24:0:0%:13,11,0,0 0/0:.:9:9:0:0%:5,4,0,0 -chr1 45293304 . G . PASS DP=34;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:24:0:0%:13,11,0,0 0/0:.:9:8:0:0%:4,4,0,0 -chr1 45293305 . T . PASS DP=34;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:23:0:0%:12,11,0,0 0/0:.:9:9:0:0%:5,4,0,0 -chr1 45293306 . C . PASS DP=34;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:25:0:0%:14,11,0,0 0/0:.:9:8:0:0%:4,4,0,0 -chr1 45293307 . A . PASS DP=34;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:24:0:0%:13,11,0,0 0/0:.:9:9:0:0%:5,4,0,0 -chr1 45293308 . G . PASS DP=34;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:25:25:0:0%:14,11,0,0 0/0:.:9:8:0:0%:5,3,0,0 -chr1 45293309 . G . PASS DP=33;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:24:23:0:0%:13,10,0,0 0/0:.:9:9:0:0%:5,4,0,0 -chr1 45293310 . G . PASS DP=32;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:23:22:0:0%:12,10,0,0 0/0:.:9:8:0:0%:5,3,0,0 -chr1 45293484 . T . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:50:0:0%:27,23,0,0 0/0:.:10:8:0:0%:5,3,0,0 -chr1 45293485 . A . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:27,26,0,0 0/0:.:10:9:0:0%:5,4,0,0 -chr1 45293486 . A . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:52:0:0%:26,26,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293487 . G . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:52:0:0%:27,25,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293488 . T . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:52:0:0%:26,26,0,0 0/0:.:10:6:0:0%:5,1,0,0 -chr1 45293489 . C . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:27,26,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293490 . T . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:27,26,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293491 . C . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:52:0:0%:27,25,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293492 . T . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:52:0:0%:27,25,0,0 0/0:.:10:9:0:0%:5,4,0,0 -chr1 45293493 . G . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:27,26,0,0 0/0:.:10:5:0:0%:5,0,0,0 -chr1 45293494 . C . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:27,26,0,0 0/0:.:10:9:0:0%:5,4,0,0 -chr1 45293495 . C . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:27,26,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293496 . C . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:27,26,0,0 0/0:.:10:8:0:0%:5,3,0,0 -chr1 45293497 . T . PASS DP=64;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:53:0:0%:26,27,0,0 0/0:.:10:7:0:0%:4,3,0,0 -chr1 45293498 . G . PASS DP=64;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:54:0:0%:27,27,0,0 0/0:.:10:8:0:0%:5,3,0,0 -chr1 45293499 . C . PASS DP=64;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:54:0:0%:27,27,0,0 0/0:.:10:8:0:0%:4,4,0,0 -chr1 45293500 . T . PASS DP=64;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:52:0:0%:26,26,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293501 . C . PASS DP=64;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:51:0:0%:27,24,0,0 0/0:.:10:8:0:0%:5,3,0,0 -chr1 45293502 . T . PASS DP=64;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:53:0:0%:27,26,0,0 0/0:.:10:8:0:0%:5,3,0,0 -chr1 45293503 . G . PASS DP=64;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:54:0:0%:27,27,0,0 0/0:.:10:9:0:0%:5,4,0,0 -chr1 45293504 . C . PASS DP=64;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:53:0:0%:26,27,0,0 0/0:.:10:9:0:0%:5,4,0,0 -chr1 45293505 . C . PASS DP=64;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:53:0:0%:26,27,0,0 0/0:.:10:9:0:0%:5,4,0,0 -chr1 45293506 . C . PASS DP=64;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:53:0:0%:27,26,0,0 0/0:.:10:9:0:0%:5,4,0,0 -chr1 45293507 . A . PASS DP=64;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:54:0:0%:27,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293508 . G . PASS DP=64;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:54:0:0%:27,27,0,0 0/0:.:10:9:0:0%:5,4,0,0 -chr1 45293509 . T . PASS DP=64;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:52:0:0%:26,26,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293510 . C . PASS DP=64;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:52:0:0%:27,25,0,0 0/0:.:10:9:0:0%:5,4,0,0 -chr1 45293511 . T . PASS DP=64;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:54:0:0%:27,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293512 . T . PASS DP=64;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:54:0:0%:27,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293513 . A . PASS DP=64;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:54:0:0%:27,27,0,0 0/0:.:10:9:0:0%:5,4,0,0 -chr1 45293514 . C . PASS DP=64;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:53:0:0%:27,26,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293515 . C . PASS DP=64;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:53:0:0%:27,26,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293516 . T . PASS DP=64;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:54:53:0:0%:27,26,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293517 . T . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293518 . A G . PASS DP=63;SOMATIC;SS=2;SSC=34;GPV=1E0;SPV=3.5255E-4 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/1:.:10:6:4:40%:3,3,2,2 -chr1 45293519 . G . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:52:0:0%:26,26,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293520 . C . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:9:0:0%:5,4,0,0 -chr1 45293521 . A . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293522 . T . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293523 . G T . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=8.3871E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:51:1:1.92%:25,26,0,1 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293524 . T . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293525 . G . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293526 . A . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293527 . C . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:9:0:0%:5,4,0,0 -chr1 45293528 . T . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293529 . G . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293530 . G . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293531 . A . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293532 . G . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293533 . C . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293534 . A . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293535 . G . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:9:0:0%:5,4,0,0 -chr1 45293536 . C . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:52:0:0%:25,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293537 . A . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293538 . A . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293539 . C . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293540 . G . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293541 . G . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293542 . G . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:52:0:0%:26,26,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293543 . G . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:52:0:0%:26,26,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293544 . C . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293545 . A . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293546 . A . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293547 . A . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293548 . C . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293549 . T . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293550 . G . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293551 . A . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293552 . T . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:52:0:0%:26,26,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293553 . A . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293554 . G . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:52:0:0%:26,26,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293555 . C . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:52:0:0%:26,26,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293556 . G . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293557 . G . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293558 . G . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293559 . C . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:52:0:0%:25,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293560 . G . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:9:0:0%:4,5,0,0 -chr1 45293561 . A . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293562 . A . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:52:0:0%:25,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293563 . A . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:51:0:0%:25,26,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293564 . T . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:51:0:0%:25,26,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293565 . G . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:52:0:0%:26,26,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293566 . G . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293567 . G . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:51:0:0%:26,25,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293568 . C . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293569 . A . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293570 . A . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293571 . G . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293572 . A . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293573 . T . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293574 . T . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293575 . C . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293576 . C . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293577 . A . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293578 . G . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:51:0:0%:25,26,0,0 0/0:.:10:9:0:0%:4,5,0,0 -chr1 45293579 . C . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:53:0:0%:26,27,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293580 . G . PASS DP=63;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:53:48:0:0%:21,27,0,0 0/0:.:10:9:0:0%:4,5,0,0 -chr1 45293581 . G . PASS DP=62;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:52:52:0:0%:26,26,0,0 0/0:.:10:9:0:0%:4,5,0,0 -chr1 45293582 . G . PASS DP=62;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:52:52:0:0%:26,26,0,0 0/0:.:10:9:0:0%:4,5,0,0 -chr1 45293583 . C . PASS DP=62;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:52:51:0:0%:25,26,0,0 0/0:.:10:9:0:0%:4,5,0,0 -chr1 45293584 . A . PASS DP=62;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:52:50:0:0%:26,24,0,0 0/0:.:10:9:0:0%:4,5,0,0 -chr1 45293585 . C . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:49:0:0%:24,25,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293586 . A . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:50:0:0%:25,25,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293587 . G . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:49:0:0%:24,25,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293588 . G . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:49:0:0%:24,25,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293589 . G . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:50:0:0%:25,25,0,0 0/0:.:10:9:0:0%:4,5,0,0 -chr1 45293590 . C . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:49:0:0%:24,25,0,0 0/0:.:10:5:0:0%:0,5,0,0 -chr1 45293591 . A . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:50:0:0%:25,25,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293592 . G . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:50:0:0%:25,25,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293593 . G . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:50:0:0%:25,25,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293594 . G . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:49:0:0%:24,25,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293595 . A . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:49:0:0%:25,24,0,0 0/0:.:10:9:0:0%:4,5,0,0 -chr1 45293596 . C . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:49:0:0%:24,25,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293597 . T . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:49:0:0%:24,25,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293598 . T . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:48:0:0%:23,25,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293599 . G . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:49:0:0%:25,24,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293600 . C . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:49:0:0%:24,25,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293601 . A . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:49:0:0%:24,25,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293602 . G . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:50:0:0%:25,25,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293603 . G . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:49:0:0%:24,25,0,0 0/0:.:10:9:0:0%:4,5,0,0 -chr1 45293604 . C . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:49:0:0%:24,25,0,0 0/0:.:10:5:0:0%:0,5,0,0 -chr1 45293605 . T . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:50:0:0%:25,25,0,0 0/0:.:10:9:0:0%:4,5,0,0 -chr1 45293606 . G . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:49:0:0%:24,25,0,0 0/0:.:10:8:0:0%:3,5,0,0 -chr1 45293607 . C . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:49:0:0%:24,25,0,0 0/0:.:10:5:0:0%:0,5,0,0 -chr1 45293608 . C . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:50:0:0%:25,25,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293609 . T . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:49:0:0%:24,25,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293610 . T . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:50:0:0%:25,25,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293611 . C . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:49:0:0%:24,25,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293612 . T . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:50:0:0%:25,25,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293613 . G . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:50:0:0%:25,25,0,0 0/0:.:10:8:0:0%:3,5,0,0 -chr1 45293614 . C . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:49:0:0%:24,25,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293615 . C . PASS DP=60;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:50:49:0:0%:24,25,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293616 . T . PASS DP=57;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:47:47:0:0%:22,25,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr1 45293617 . T . PASS DP=57;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:47:46:0:0%:21,25,0,0 0/0:.:10:5:0:0%:0,5,0,0 -chr1 45293618 . G . PASS DP=57;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:47:46:0:0%:21,25,0,0 0/0:.:10:5:0:0%:0,5,0,0 -chr1 45293619 . T . PASS DP=57;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:47:46:0:0%:21,25,0,0 0/0:.:10:9:0:0%:4,5,0,0 -chr1 45293620 . C . PASS DP=57;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:47:47:0:0%:22,25,0,0 0/0:.:10:9:0:0%:4,5,0,0 -chr1 45293621 . T . PASS DP=57;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:47:47:0:0%:22,25,0,0 0/0:.:10:6:0:0%:1,5,0,0 -chr1 45293622 . C . PASS DP=57;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:47:47:0:0%:22,25,0,0 0/0:.:10:10:0:0%:5,5,0,0 -chr5 156750993 . T . PASS DP=30;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:22:22:0:0%:10,12,0,0 0/0:.:8:7:0:0%:3,4,0,0 -chr5 156750994 . G . PASS DP=30;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:22:22:0:0%:10,12,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156750995 . A . PASS DP=30;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:22:22:0:0%:10,12,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156750996 . G . PASS DP=27;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:10,9,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156750997 . G . PASS DP=27;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:10,9,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156750998 . A . PASS DP=27;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:10,9,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156750999 . G . PASS DP=27;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:10,9,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751000 . C . PASS DP=27;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:10,9,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751001 . A . PASS DP=27;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:19:19:0:0%:10,9,0,0 0/0:.:8:7:0:0%:4,3,0,0 -chr5 156751006 . G . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751007 . G . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751008 . A . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751009 . T . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751010 . G . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751011 . G . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751012 . A . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:19:0:0%:9,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751013 . C . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:7:0:0%:4,3,0,0 -chr5 156751014 . C . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751015 . C . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751016 . A . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751017 . T . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751018 . T . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:7:0:0%:4,3,0,0 -chr5 156751019 . G . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751020 . T . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:7:0:0%:4,3,0,0 -chr5 156751021 . C . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:7:0:0%:4,3,0,0 -chr5 156751022 . C . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751023 . T . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751024 . C . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:19:0:0%:10,9,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751025 . G . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:19:0:0%:9,10,0,0 0/0:.:8:7:0:0%:3,4,0,0 -chr5 156751026 . C . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:7:0:0%:3,4,0,0 -chr5 156751027 . C . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751028 . A . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751029 . T . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:19:0:0%:10,9,0,0 0/0:.:8:7:0:0%:4,3,0,0 -chr5 156751030 . A . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:19:0:0%:9,10,0,0 0/0:.:8:7:0:0%:4,3,0,0 -chr5 156751031 . G . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751032 . A . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:19:0:0%:9,10,0,0 0/0:.:8:7:0:0%:4,3,0,0 -chr5 156751033 . G . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:7:0:0%:4,3,0,0 -chr5 156751034 . G . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:7:0:0%:4,3,0,0 -chr5 156751035 . A . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:7:0:0%:4,3,0,0 -chr5 156751036 . C . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751037 . T . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751038 . T . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:7:0:0%:4,3,0,0 -chr5 156751039 . T . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751040 . C . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751041 . A . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751042 . C . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751043 . A . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751044 . A . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751045 . A . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:19:0:0%:10,9,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751046 . C . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751047 . A . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:7:0:0%:4,3,0,0 -chr5 156751048 . G . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:19:0:0%:9,10,0,0 0/0:.:8:6:0:0%:2,4,0,0 -chr5 156751049 . T . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751050 . C . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751051 . C . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751052 . T . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751053 . T . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751054 . C . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751055 . T . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751056 . T . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751057 . C . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751058 . T . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:19:0:0%:10,9,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751059 . T . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751060 . C . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751061 . A . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:19:0:0%:9,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751062 . C . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751063 . A . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:6:0:0%:4,2,0,0 -chr5 156751064 . C . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751065 . A . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:18:0:0%:8,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751066 . T . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751067 . C . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:7:0:0%:4,3,0,0 -chr5 156751068 . T . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:7:0:0%:4,3,0,0 -chr5 156751069 . G . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751070 . C . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751071 . T . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751072 . C . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751073 . A . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:20:0:0%:10,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751074 . A . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:19:0:0%:9,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751075 . C . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:18:0:0%:8,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156751076 . A . PASS DP=28;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:20:18:0:0%:8,10,0,0 0/0:.:8:5:0:0%:2,3,0,0 -chr5 156751077 . T . PASS DP=26;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:18:17:0:0%:7,10,0,0 0/0:.:8:6:0:0%:2,4,0,0 -chr5 156751078 . C . PASS DP=24;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:16:15:0:0%:5,10,0,0 0/0:.:8:8:0:0%:4,4,0,0 -chr5 156788529 . C . PASS DP=20;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:11:9:0:0%:4,5,0,0 0/0:.:9:7:0:0%:3,4,0,0 -chr5 156788530 . T . PASS DP=21;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:12:12:0:0%:6,6,0,0 0/0:.:9:6:0:0%:2,4,0,0 -chr5 156788531 . C CA . PASS DP=21;SS=1;SSC=9;GPV=1.9541E-4;SPV=1.1491E-1 GT:GQ:DP:RD:AD:FREQ:DP4 0/1:.:11:7:4:36.36%:4,3,2,2 1/1:.:10:2:6:75%:1,1,3,3 -chr5 156788532 . A . PASS DP=22;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:12:8:0:0%:5,3,0,0 0/0:.:10:4:0:0%:3,1,0,0 -chr5 156788533 . A . PASS DP=22;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:12:8:0:0%:5,3,0,0 0/0:.:10:4:0:0%:3,1,0,0 -chr5 156788534 . A . PASS DP=22;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:12:7:0:0%:5,2,0,0 0/0:.:10:3:0:0%:3,0,0,0 -chr5 156788535 . A . PASS DP=22;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:12:8:0:0%:5,3,0,0 0/0:.:10:4:0:0%:3,1,0,0 -chr5 156788536 . C . PASS DP=22;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:12:12:0:0%:7,5,0,0 0/0:.:10:9:0:0%:5,4,0,0 -chr5 156788537 . A . PASS DP=22;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:12:12:0:0%:7,5,0,0 0/0:.:10:8:0:0%:4,4,0,0 -chr5 156788538 . G . PASS DP=22;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:12:12:0:0%:7,5,0,0 0/0:.:10:10:0:0%:6,4,0,0 -chr5 156788539 . A . PASS DP=22;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:12:11:0:0%:7,4,0,0 0/0:.:10:10:0:0%:6,4,0,0 -chr5 156788540 . C . PASS DP=22;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:12:10:0:0%:5,5,0,0 0/0:.:10:10:0:0%:6,4,0,0 -chr5 156788541 . G . PASS DP=22;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:12:11:0:0%:6,5,0,0 0/0:.:10:10:0:0%:6,4,0,0 -chr5 156788542 . T . PASS DP=21;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:11:10:0:0%:5,5,0,0 0/0:.:10:9:0:0%:5,4,0,0 -chr5 156788543 . G . PASS DP=20;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:10:10:0:0%:6,4,0,0 0/0:.:10:10:0:0%:6,4,0,0 -chr5 156788544 . T . PASS DP=20;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:10:9:0:0%:5,4,0,0 0/0:.:10:10:0:0%:6,4,0,0 -chr5 156788545 . T . PASS DP=20;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:10:10:0:0%:6,4,0,0 0/0:.:10:10:0:0%:6,4,0,0 -chr5 156788546 . C . PASS DP=20;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:10:10:0:0%:6,4,0,0 0/0:.:10:10:0:0%:6,4,0,0 -chr5 156788547 . C . PASS DP=19;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:10:9:0:0%:5,4,0,0 0/0:.:9:8:0:0%:4,4,0,0 -chr5 156788548 . A . PASS DP=19;SS=0;SSC=0;GPV=1E0;SPV=1E0 GT:GQ:DP:RD:AD:FREQ:DP4 0/0:.:10:9:0:0%:5,4,0,0 0/0:.:9:9:0:0%:5,4,0,0