Mercurial > repos > geert-vandeweyer > varscan_wrapper

view tool_dependencies.xml @ 3:b2ad469e0ff9 draft

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fixed vcf and native output versions.
author geert-vandeweyer
date Tue, 11 Mar 2014 06:11:19 -0400
parents 90c9b7a6e58b
children
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<?xml version="1.0"?>
<tool_dependency>
    <package name="VarScan" version="2.3.5">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://downloads.sourceforge.net/project/varscan/VarScan.v2.3.5.jar</action>
                <action type="move_file">
                    <source>VarScan.v2.3.5.jar</source>
                    <destination>$INSTALL_DIR/jars</destination>
                </action>
                <action type="set_environment">
                    <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR/jars</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        </readme>
    </package>
</tool_dependency>