Mercurial > repos > geert-vandeweyer > vcf_to_variantdb
comparison VCF_to_VariantDB.pl @ 5:6ddc1c6472ef draft
Macro corrections
| author | geert-vandeweyer |
|---|---|
| date | Fri, 21 Feb 2014 06:38:35 -0500 |
| parents | d03a63a57e82 |
| children | 04e3bba317f4 |
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| 4:7ebc71784e9f | 5:6ddc1c6472ef |
|---|---|
| 79 } | 79 } |
| 80 else { | 80 else { |
| 81 die("ERROR: $content"); | 81 die("ERROR: $content"); |
| 82 } | 82 } |
| 83 | 83 |
| 84 print $opts{'H'}. " was specified as galaxy host\n"; | |
| 85 | |
| 84 ############################################### | 86 ############################################### |
| 85 ## SEND THE VCF AND BAM FILES FOR PROCESSING ## | 87 ## SEND THE VCF AND BAM FILES FOR PROCESSING ## |
| 86 ############################################### | 88 ############################################### |
| 87 # filepaths | 89 # filepaths |
| 88 my $vcfpath = $opts{'v'}; | 90 my $vcfpath = $opts{'v'}; |